Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi56g00014 ATGAAACAACTTAATATTACCCTTTTGATTCTCTCAATCATATTCATCAATCATGTTAGAGCACAAACACAAAGTTCATCATCACAAGATGCTGTCTCAAATTTCCAACCAAGTCTTGCTGTTGTCATAGGAATCCTAGGTCTTATGTTTGCACTAACATTCATTCTTCTTATTTTTGCCAAAGTATGTCATCATAGACAACTACTTCCTCTTAGTGGTGATCCAAATAATCAACTATCAACTCTCATGAGATCAAGGTCAAGATTTTCAGGTATTGACAAAACATCTATAGAATCACTTCCTTTTTTTAGATTCTCTTCTCTCAAAGGTTCAAAACAAGGGTTGGAATGTTCAATATGTTTGTCAAAATTTGAAGATGTGGAGATTTTAAGATTGTTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAGAAACATTCAAGTTGTCCTATTTGTAGAAATAAAGTCAACATTGAAGATGAAACAACCTTTGCATACTCAAATAGTTTAAGGATGTTGGTAAGTGATGAATCAAACATAGAGATCTTTGTCGAAAGAGAAGAAGAAAAAGAAAATCGACATGGTTCATCGAGATTTAGTATTGGAAGTAGCTTTAGAAAAATCGGAAAAAGTAGTATTAATGATGAAGAATTGCTTATACAAAAAGGATCAGAAGAACGAGAAGAATGTAATCATATATGTCAATGTCATACTGGTGACACTGGTAACAGTAACGTTTTTAATCAAAAGTGTCGGTGTTACAGAGATTTTCACAAACACAACCATCAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGTAATGTTAGTTCTTCGGATCTTATGTTTTTGAATTCGGAGATGATTAATGCTACATCGAGTAATAGATTCAACAACATGGAATCAAATTCTAATGATGGACCAAAATATGTGAAACATGATGGTGAGAAAAGATCAGTTTCGGAAATCACTGGTGTTTCTAGATTTAGAGAATTTGATATGAAGAAAAGGGTGTTTGGAGATTGTTCATTGGTTGAAAATGATGTTAAAGAGGAAAGAATAAGGAAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAATAGGTCTCAACAAAAGTCATTTGTAGATGTATAA 1179 0.3249 MKQLNITLLILSIIFINHVRAQTQSSSSQDAVSNFQPSLAVVIGILGLMFALTFILLIFAKVCHHRQLLPLSGDPNNQLSTLMRSRSRFSGIDKTSIESLPFFRFSSLKGSKQGLECSICLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRNKVNIEDETTFAYSNSLRMLVSDESNIEIFVEREEEKENRHGSSRFSIGSSFRKIGKSSINDEELLIQKGSEEREECNHICQCHTGDTGNSNVFNQKCRCYRDFHKHNHQITISDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMESNSNDGPKYVKHDGEKRSVSEITGVSRFREFDMKKRVFGDCSLVENDVKEERIRKLWFPIARRTAEWFVNRENRSQQKSFVDV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi56g00014 392 CDD RING-H2_EL5-like 116 159 - -
Vivi56g00014 392 SMART ring_2 117 158 IPR001841 -
Vivi56g00014 392 Pfam Ring finger domain 116 159 IPR001841 -
Vivi56g00014 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 168 IPR013083 -
Vivi56g00014 392 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vivi56g00014 392 MobiDBLite consensus disorder prediction 303 324 - -
Vivi56g00014 392 FunFam RING-H2 finger protein ATL43 92 166 - -
Vivi56g00014 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 382 - -
Vivi56g00014 392 SUPERFAMILY RING/U-box 101 165 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi56g00014 17 381 C3H Transcription Factor Family AT2G20030 47.716 4.32e-102 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi56g00014 K10664 - gmx:100803207 424.476