Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi56g00013 ATGGGTTGCATTTACTCAAGAGTTTGCATAGGTGACACTTGCAAGGGTTCTAGCATCAACGATGATGCAATTTCAATTTCAAGACATGAGTTTCATGAAGTTAATCCCTTTTCACCATTTGAAGGTGAAGTTAGAGATCAATTGAATCAATTAAGCTTAACAAGAGATTCAGAAGCTGGAATTAGAAGATTAGCTAGGGTTTCATCACAGTTTTTACCTGCTGATGGGTCAAGAACAGTGAGAATTGGTTCTTATAACTATGAATTACGGTATTCTTATCTTTCACAACGTGGTTATTATCCTGATGCTCTTGATAAGGCCAATCAGGATAGTTTTTGTATTCATACACCTTTTGGGAATGATGTGAATGATCATTTTTTCGGTGTTTTCGATGGTCATGGTGAGTTCGGAGCAGAGTGTTCGCAGTTTGTGAAGCGTAAGCTTTGTGAGAATCTGTTGAGGAACTCTAAGTTTAGTGTTGATGCCATTGAGGCTTGTCATTCGGCTTTTTTAGCGACGAATTCACAGTTGCATAGTGATATTTTAGACGATAATATGAGTGGGACGACCGCGATAACAGTTTTGGTTAGAGGGAGAACGGTTTATGTGGCGAATTGTGGGGATTCGAGGGCGGTTATAGCTGAGAAGAGAGGGAAAGATGGTGGTGGTGGTGAGGGTGGTGTTGTGGCGGTTGATTTGTCGATTGATCAGACACCGTTTAGGGTTGATGAATTGGAAAGAGTGAAACTTTGTGGTGCTAGGGTACTTACTTTGGATCAAATTGAAGGGTTAAAGAATCCTGATGTTCAATGTTGGGGTAGTGATGAAGAAGGTGATGATGGTGATCCTCCTAGGTTGTGGGTTCCGAACGGGATGTATCCTGGTACTGCGTTTACGAGGAGTATTGGTGATTCTATTGCGGAGAGTATTGGTGTTGTTGCTGTTCCTGAGATTGTTACTTTTGAACTCACACATAATCATCCATTTTTTGTTATTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGCCAAACTGTGGTTGATATGGTTGCAAAATTCAAAGATCCGCGCGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTTTGGCTACAGTACGAGACTCGTACAGATGATATTACAGTAATCATTGTGCATATAAATGGCCTAAATGAACCCGCTGTTGCTCACTCGGCAAGTTCTCGCGATGTCTTACAAACTCCTGCCCCTAAGGTTGTAGAGGTGACAGGTTCAGAGTCGCCTTCCACCTTTGGCTGGAATGCTAGAAACCATCGCGTAAGGCAAGAATTGTCAAGGGCACGCCTTCGAGCAATTGAAAATTCTCTTGAGAATGGACAAGGTTGGGTTCCTCCATCTTCAGCACACAGAAAGACATGGGAGGAAGAAGTACACATAGAGCAGGCATTGAAGGATCATTTTCTCTTCCGAAAACTTACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTCGAAGTCGAAGCTGAGGATATTATAGTCAAACAGGGTGGGGAAAGTGACTGCTTTTATGTTGTCGGAAGCGGAGAATTTGAGGTCTTGGCGACTCAGGAAGAAAAAGATGGTGAGGTTCCTAGGGTTTTGCAGAGCTACACAGCCGAAAAATTATCGTGCTTCGGGGAACTCGCTCTTATGTACAACAAACCGCTCCAGGCTTCTGTGCGTGCCGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCGGAATTCTCTAACTTATCATCGTTGAAGTTACTTCGGTCTGTAGATCTCCTCTCAAGATTATCAATTTTACAACTGAGTCAAATTTCCGACTCCCTTACAGAAGTTTCCTTCTCAAGTGGACAGACAATAATCGATAAAAATGAAGTCCTTGCATTGTACATCATCCAAAAGGGACGAGTAAAAATAACTTTCGATGCCGATTTGTTGACAAGTCCAAATACCAATAGTCTCAATAATGACATTCAAAATGAGGATGATGATGATGATGATAAACAACATGGAACAGAATTGTCAATAGAGAAGCCAGAGGGAAGCTATTTCGGTGAATGGTCCCTTCTTGATGAAGAACACATTGGTTCCTTAACTGCTGTTGCTATCGATGATGTTGTATGTGCTTTACTATCAAAGGAGAAATTTGAATCCGTTATTGGCCCCTTACAAAAGATTACTCAGGAAGATCACAAGTCGAGAGACAATTCCAAGGAATTGACTAAAAACTTTGAATTATCATCCCTTGATAAAGTCCAGCTCACGGATTTGGAGTGGAGAAAGACGCTATATTCCACTGATTGTTCTGAGATTGGACTCGCAAACTTAAGAGACTCAGAAAATGTGCTTACTTTGAAGAAATTTTCCAAGTCGAAAGTGAAAAGACTAGGAAAAGAATCACAAGTCTTGAAAGAGAGAGATTTGATTAAGGGTATGAGCTCTTCAGCTTGTGTACCACAAGTTTTACGCACCATTGCTGACCGCTCATGTGCTGGAATACTGCTAAATACTCGTCTTGCCTGCCCGTTGTCTTCCATACTCTCAAGTCCTTTTAGCGAATCAGCAGCCCAATTTTGCGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTGTTTCATCTGATGTTTTGATGTTGGATCAAACAGGACAGATACAGCTGGTAGACTTCAGATTTGGAAAGAAACTATCTGATGAGCGAACATTCACAATTTGCGGGATGGCAGATTCGCTAGCTCCAGAGATTGTTTTGGGAAAAGGCCACGGTTTCCCTGCCGACTGGTGGGCGTTGGGAGTTTTAGTGTATTTTATGTTGCAGGGCGAAATGCCATTTGGATCTTGGAGAGAAAACGAACTCGATACAGTTGCCAAAATTGCAAAAAGAAAACTAAATCTTCCAGACACTTTTAGCCCTGAAGCTGCTGATCTCATCTCCAAGTTACTTGAGGTGGAAGAAAGTACAAGACTTGGTAGCCAAGGTTCCGATTCTGTTAAGAATCACTTATGGTTTAATGGTATCGACTGGGAAGCGATTAGAAACCGCACTTTTCCAGTTCCTCCTGAAATTACTTCTCGTGTAACACAATATTTGGAAGCTCGTTTGGAGGATTGTAGTGCTTCTATAGAGTCCCCGTCACAAGAAGTAGAAGAACTCAATGTGCCTGAATGGCTTGAAGATTGGTAA 3252 0.4167 MGCIYSRVCIGDTCKGSSINDDAISISRHEFHEVNPFSPFEGEVRDQLNQLSLTRDSEAGIRRLARVSSQFLPADGSRTVRIGSYNYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGNDVNDHFFGVFDGHGEFGAECSQFVKRKLCENLLRNSKFSVDAIEACHSAFLATNSQLHSDILDDNMSGTTAITVLVRGRTVYVANCGDSRAVIAEKRGKDGGGGEGGVVAVDLSIDQTPFRVDELERVKLCGARVLTLDQIEGLKNPDVQCWGSDEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAESIGVVAVPEIVTFELTHNHPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPAVAHSASSRDVLQTPAPKVVEVTGSESPSTFGWNARNHRVRQELSRARLRAIENSLENGQGWVPPSSAHRKTWEEEVHIEQALKDHFLFRKLTDSQCHVLLDCMQRVEVEAEDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQSYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLTEVSFSSGQTIIDKNEVLALYIIQKGRVKITFDADLLTSPNTNSLNNDIQNEDDDDDDKQHGTELSIEKPEGSYFGEWSLLDEEHIGSLTAVAIDDVVCALLSKEKFESVIGPLQKITQEDHKSRDNSKELTKNFELSSLDKVQLTDLEWRKTLYSTDCSEIGLANLRDSENVLTLKKFSKSKVKRLGKESQVLKERDLIKGMSSSACVPQVLRTIADRSCAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSSDVLMLDQTGQIQLVDFRFGKKLSDERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLVYFMLQGEMPFGSWRENELDTVAKIAKRKLNLPDTFSPEAADLISKLLEVEESTRLGSQGSDSVKNHLWFNGIDWEAIRNRTFPVPPEITSRVTQYLEARLEDCSASIESPSQEVEELNVPEWLEDW 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi56g00013 1083 SUPERFAMILY Protein kinase-like (PK-like) 763 1052 IPR011009 -
Vivi56g00013 1083 CDD PP2Cc 106 388 IPR001932 -
Vivi56g00013 1083 ProSiteProfiles PPM-type phosphatase domain profile. 90 388 IPR001932 -
Vivi56g00013 1083 Pfam Cyclic nucleotide-binding domain 627 735 IPR000595 -
Vivi56g00013 1083 Pfam Cyclic nucleotide-binding domain 501 592 IPR000595 -
Vivi56g00013 1083 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 456 596 - -
Vivi56g00013 1083 Pfam Protein kinase domain 790 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi56g00013 1083 SMART PP2C_4 91 386 IPR001932 -
Vivi56g00013 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 608 752 IPR000595 -
Vivi56g00013 1083 SUPERFAMILY cAMP-binding domain-like 599 741 IPR018490 -
Vivi56g00013 1083 SUPERFAMILY PP2C-like 78 391 IPR036457 -
Vivi56g00013 1083 SUPERFAMILY cAMP-binding domain-like 465 592 IPR018490 -
Vivi56g00013 1083 CDD CAP_ED 608 744 IPR000595 -
Vivi56g00013 1083 Gene3D Phosphorylase Kinase; domain 1 770 1046 - -
Vivi56g00013 1083 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 85 390 - -
Vivi56g00013 1083 Gene3D Jelly Rolls 451 590 IPR014710 -
Vivi56g00013 1083 Pfam Protein phosphatase 2C 117 367 IPR001932 -
Vivi56g00013 1083 SMART serkin_6 780 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi56g00013 1083 SMART cnmp_10 482 605 IPR000595 -
Vivi56g00013 1083 SMART cnmp_10 608 750 IPR000595 -
Vivi56g00013 1083 PRINTS cAMP-dependent protein kinase signature 503 517 - -
Vivi56g00013 1083 PRINTS cAMP-dependent protein kinase signature 553 562 - -
Vivi56g00013 1083 PRINTS cAMP-dependent protein kinase signature 731 743 - -
Vivi56g00013 1083 PRINTS cAMP-dependent protein kinase signature 518 532 - -
Vivi56g00013 1083 ProSiteProfiles Protein kinase domain profile. 772 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi56g00013 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1044 - -
Vivi56g00013 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 482 591 IPR000595 -
Vivi56g00013 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 472 1047 - -
Vivi56g00013 1083 CDD CAP_ED 482 591 IPR000595 -
Vivi56g00013 1083 Gene3D - 84 389 IPR036457 -
Vivi56g00013 1083 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Vivi56g00013 1083 Gene3D Jelly Rolls 594 755 IPR014710 -
Vivi56g00013 1083 MobiDBLite consensus disorder prediction 667 690 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi56g00013 1 1083 PP2C-type Phosphatase Gene Family AT2G20050 66.186 0.0 1450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Vivi56g00013 PP2C 1.4e-33 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi56g00013 - - psat:127117483 1967.59