Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi56g00002 ATGGTTGATGATTCACCTTCTCCACCTTCACCTTCATCACCACCACAATCATTGACTTGTTCAAGTGATGAAGAAAAGAGAGCAAAGAAAAGAGAAAGAGATAACAACAAAAACATAAACACTAACACAAACACTAATCATCCAGTTTATAGAGGAGTTAGAATGCGCACGTGGGGAAAATGGGTTTCTGAAATCAGAGAACCAAAGAAGAAAAACCGAATCTGGCTTGGAACATTCGAAACAGCCGAAATGGCGGCGCGTGCACACGACGCAGCAGCACTAACCTTAAAAGGCTCATCCGCATTCCTTAACTTCCCCGAACTCTCATCTTCACTTCCAAAACCAGCTTCCACCTCACCCAAAGATGTTCAAGCCGCCGCTGCCAAAGCCGCTCTCATGATCCCTCCGCCACCTCTCTCACCGGAACCTTCTACTTCCTCCTCCACCTCCACCACCACCACTACCTCAACGTCCACATCCTCCTCCTCTTTATCTTCTTCTTCTCCGATGCCGGAAGATCTCGTTGAGATTGTTGAACTACCACGACTCGGAACATGTTTTGAAACACTTGACCCGAGTAACGAGTTAGTGTTTTTTGACTCGGTTGATTATTCAGAATCATGGTATCATGGCATTTATGATGATGAAGAAGAGAATGGTTATGGGAGTGGATGCAACTTCAACTTGATATCAATGCATGACCCAGAAAACACGGTTCTTTCATTGTGGTCTTGA 735 0.4503 MVDDSPSPPSPSSPPQSLTCSSDEEKRAKKRERDNNKNINTNTNTNHPVYRGVRMRTWGKWVSEIREPKKKNRIWLGTFETAEMAARAHDAAALTLKGSSAFLNFPELSSSLPKPASTSPKDVQAAAAKAALMIPPPPLSPEPSTSSSTSTTTTTSTSTSSSSLSSSSPMPEDLVEIVELPRLGTCFETLDPSNELVFFDSVDYSESWYHGIYDDEEENGYGSGCNFNLISMHDPENTVLSLWS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi56g00002 244 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Vivi56g00002 244 MobiDBLite consensus disorder prediction 133 171 - -
Vivi56g00002 244 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vivi56g00002 244 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vivi56g00002 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 185 - -
Vivi56g00002 244 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vivi56g00002 244 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vivi56g00002 244 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vivi56g00002 244 MobiDBLite consensus disorder prediction 144 170 - -
Vivi56g00002 244 MobiDBLite consensus disorder prediction 1 48 - -
Vivi56g00002 244 MobiDBLite consensus disorder prediction 22 37 - -
Vivi56g00002 244 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Vivi56g00002 244 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vivi56g00002 244 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi56g00002 11 229 AP2-EREBP Transcription Factor Family AT5G11590 49.776 2.27e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi56g00002 AP2 4.7e-14 CL0081