Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi561g00002 ATGCATGGAGAAAATTTACATAAGGGAACTTGGCTTCAAGAGGAAGATGAACAATTGATTAGCTTTGTGACTCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGGCTAAGGAGAAGTGGTAAAAGCTGTCGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAGCATGGCCCGTTTAGTGTTGAAGAAGAGAAGCTTATTGTTCAACTTCAGCTTCAATGGGGCAACAAGTGGTCCAAGATCGCGCGCAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACTCATTTGCAGAAAGGAGTACAAGTTCAACAAAAAGGTGAGTTAGTTTATAAAGAAGAAAATGTAGGTCATGATTTGAACAAGAAAAGCATTGTTGAGGGTATGGAAAGCTGTATAGATAGTTCTCCTTTATCAGATTGGGGAATGAGGAATTCACCTTATCATGAAAGTAGGATATTGGATTGGATAGCAGAATTGCAAAATGGATTTGGTGATAAGGAAAAGGAATTAGGACAAGAATGTAATAGCAATGAATCAATGTATGAATATAATCCCCATCAAGAATATTATGATACATGGGATTATTCAGGTTTTCTATGGGACTTGTGA 639 0.3897 MHGENLHKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFSVEEEKLIVQLQLQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKGVQVQQKGELVYKEENVGHDLNKKSIVEGMESCIDSSPLSDWGMRNSPYHESRILDWIAELQNGFGDKEKELGQECNSNESMYEYNPHQEYYDTWDYSGFLWDL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi561g00002 212 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vivi561g00002 212 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 113 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi561g00002 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vivi561g00002 212 Gene3D - 8 60 - -
Vivi561g00002 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vivi561g00002 212 FunFam Myb transcription factor 8 60 - -
Vivi561g00002 212 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vivi561g00002 212 CDD SANT 63 106 IPR001005 -
Vivi561g00002 212 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vivi561g00002 212 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vivi561g00002 212 SMART sant 60 108 IPR001005 -
Vivi561g00002 212 SMART sant 7 57 IPR001005 -
Vivi561g00002 212 CDD SANT 10 55 IPR001005 -
Vivi561g00002 212 Gene3D - 62 133 - -
Vivi561g00002 212 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi561g00002 4 115 MYB Transcription Factor Family AT5G59780 58.929 1.08e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi561g00002 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi561g00002 K09422 - gmx:100783472 285.419