Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi561g00001 ATGACCCAAACCACCTGCATTTTCCTAATCTCACTCCTAGCTTCCTTTTTCACCCATGGAACTTCCATGCTCAACCTCACTCTCCCAGCTCAACATCCTGACCCTGAATCTGTTGCCATAGAAGTTCACAGGAAAGTGAATGAATCAATGGGAAGAAGAGAAATGCTATCAATATCAACCAAAGATTTTTCCTCATCTTGCCAAACTGGTAACCCGATAGACGATTGTTGGAAATGCGACCCAGATTGGTCCAACAATCGTCAAAGGCTAGCAGATTGCGCAATAGGGTTTGGCCAGAATGCCAAAGGAGGAAAAGGTGGTAAATTCTACATTGTAACAGACTCATCCGACAATGATCCAGTGAACCCAAAACCTGGTACACTAAGATACGCTGTCATACAGAATGAACCACTATGGATTGTTTTTCCAAGTAACATGATGATTGAGTTGTGTCAAGAGCTTATTTTTAACAGCTTTAAGACAATTGATGGACGTGGTGCTGATGTTCATATTGTGGGTGGTGGGTGCATTACTCTTCAGTATATTAGTAATGTTATTATACACAACATTCATGTTCATCACTGTCATCCTTCAGGTAACACTAACGTGCGGTCGAGTCCAGAACACTATGGATACAGAACAATATCAGACGGAGACGGAATCTCAATATTCGGATCAAGCAACATATGGATAGACCATTGCACACTCTCACGTTGCAAAGACGGTTTAATTGACGCCGTTATGGGTTCAACCGCAATAACTATCTCCAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCACAGTGACCATTACAAACCAGACTCAGCAATGCAAGTAACTATAGCATTCAACCATTTTGGTGAACAGTTAGTTCAAAGAATGCCACGTTGCAGACTCGGATACATCCACGTCGTGAATAACGATTTTACGCGATGGGAAATGTATGCTATTGGCGGAAGTGGTGGACCCACTATTTATAGTCAAGGTAATAGGTATACGGCTCCTGAGGATGTTGATGCGAAGCAAGTGACGAAGAGGTTGGATTCGGGTGAAGGGGAATGGACGACATGGAATTGGAAATCGGAGGGCGATTTTATGGTGAATGGTGCATTTTTTGTTGATTCGGGTAGTGAGAGTGAAGGGAATTTTCAGAAGGCTTATAGCGTCGATCCTAAAACGGTTGATCGGATTTCTGCTCTTACTATGTCTGCTGGTGTTCTTGGTGTTGCTAGGGACAACAATCTAGGAATGTGGACAAGAGCGCCAAACGGTGGTGGTGATTATAGTATTTCATATTCCGGAGAACAAGAGTACACTGATGACATGTCCCACAGTACGATGATGTTGACCCGTTCCTTTACTTTGACTCTTGTATCTCTTTTTGTTGCACTTTTGTGTTTGTTGTCTTATGCACCCATTCTATCCTAA 1440 0.4257 MTQTTCIFLISLLASFFTHGTSMLNLTLPAQHPDPESVAIEVHRKVNESMGRREMLSISTKDFSSSCQTGNPIDDCWKCDPDWSNNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIELCQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTISDGDGISIFGSSNIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIYSQGNRYTAPEDVDAKQVTKRLDSGEGEWTTWNWKSEGDFMVNGAFFVDSGSESEGNFQKAYSVDPKTVDRISALTMSAGVLGVARDNNLGMWTRAPNGGGDYSISYSGEQEYTDDMSHSTMMLTRSFTLTLVSLFVALLCLLSYAPILS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi561g00001 479 Pfam Pectate lyase 156 324 IPR002022 -
Vivi561g00001 479 Gene3D - 70 412 IPR012334 -
Vivi561g00001 479 SUPERFAMILY Pectin lyase-like 63 406 IPR011050 -
Vivi561g00001 479 FunFam Pectate lyase 70 412 - -
Vivi561g00001 479 PANTHER PECTATE LYASE 18-RELATED 27 414 IPR045032 GO:0030570
Vivi561g00001 479 SMART amb_all 145 342 IPR002022 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vivi561g00001 479 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi561g00001 1 479 Polysaccharide Lyase AT3G53190 67.635 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi561g00001 K01728 - gmx:100815062 765.377