Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi559g00018 ATGGCTAGCAGTAGCAGAGACTCTTCAACTTTAGCTCTGAAAAATAGCTATTTTGATGTGTTTGTGAGCTTCAGAGGTGAAGACACTCGCTACAATTTCACGGATTTTCTTTTCGACGCCTTTCAAACTCAAGGCATTTTTGCGTTCAGGGATGACAATAATCTTCCAAAAGGTGAATCCATAGCACCCGAGCTTCTTCGTGCAATCCAAGTTTCTCAGATTTTTATTGTTGTATTCTCAAGGAACTATGCTTCATCAACTTGGTGCTTGCAAGAATTGGAAAGTATATGTGAATGCGTTCAAGTGTCTGGAAAGCATGTTCTTCCTATTTTCTATGATGTTGATCCTTCTGATGTTAGGCATCAAAAAGGAATTTATGCTCAAGCTTTTGCCAAACATGAACACAGATTCCAACATGACTCCCAGATGGTGTCAAGATGGCGAGAAACTCTAACACAGGTTGCCAATCTCTCCGGATGGGATCTGCGTGATAAGCCACAATCTGCAGAGATTAAAAACATTGTTCAAAAGATAATTGATATATTGGATTGCAAATCTTCATCTGTTTCAAAAGATTTAGTTGGTATGGATTCTCCTGTACAAGAATTAGAAAAGCTTTTACTTTTGGACTCAGTTCAAGATGTTCGCGTGGTAGGAATTTGCGGAATGGGAGGAATAGGGAAGACAACTGTTGCTACTGTTTTATATGATCGAAACTCTCAACAATTCGGTGCATGTTGTTTTATTGATGATGTAAGCAAAATTTATAGGCTACACGATGGTCCACTCGGTGCACAAAAGCAAATTATAGATCAAACTCTCGGACAAGAGCACCATAACATATGCAATCATTACAGCGCAACCAATCTGATACGACGCAGGCTATGTCACCAAAGGGCCCTTATGATTCTTGATAACGTTGGTCAAGTCGAACAACTAGAAAAAATAGCTGTGCGTCGTGAATGGTTAGGTGCCGGTAGTAGAATCATTATCATTTCTAGAGATGAGCATATATTGAAACAGTATGGGGTGGATGCAGTTTACCAAATTCCTCTCTTGGATCACACTAACTCTCTTCAATTATTGTGTCGAAAAGCTTTTAAACTTGATTACATTTTGAGTAGTTATGAAGGGTTGGTTAATGGCATACTAAATTATGCCAATGGCCTACCCCTAGCAATTAATGTATTGGGTTCATTTTTGTATGGTCGAGATATTTCTGAATGGAGAAGTGCATTGGCAAGATTGAGAAAAAGTCCAGACAAAGATGTCATGAATGTGTTGCGATTAAGTTTTGATGGGCTAAGGGAGACAGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAATGGAAGTGAGAAGGAATATGTTAAAAATGTTTTAAATTGTTGTGAATTTCATGTTGATATTGGATTAAGGGTTCTTATAGATAAATCACTTGTAAGCACTGAATATGGAATCATTGTAATGCATAATTTGTTGGAAGAGCTAGGCAGAAAAATTGTTCAAGAAAACACAAGCAAAGAGCCCAGAAAGTGGAAAAGGCTATGGTTCGACAAACAGCTCTATGATGTTATGTTGGAAAACATGGAAAAGAATGTTGAAGCAATAGTTTTGGATCATGAATATGAAGAATATAGTGAGGTCGATGAAGGTATGGATGCAGTGATATTCAAAGACTTTTCAAATCTTAGATTGCTCATCATCAAGTATGTGAAAGTATCGGGAAGCCTCAATCGTCTTTCTAATGAATTGAGATATATTGAGTGGAATGAATATCCTTTCATGTATTTGCCATCATGTTTTCAACCCAATCAACTTGTTGAGCTGATATTGAAGTCTAGCAGCATCAAACAACTCTGGGAAGGCAAGAGGAATCTGCCCAAATTGAGAATTTTGGATCTGAGCCACTCCAAAAATCTAATAAAGATGCCAAATTTTGGAGAGTTCCTGAATCTTGAACGGCTAAATCTTAAAGGATGTATTAAACTTGTGATGCTGGATCCATCTATTGGGCTTCTAAGAAAGATTGTTTCCTTGAATTTAAAAGATTGCAAAAGTCTAGTAAGCATACCCAACAACATATTTGGTATCAGCTCTCTCAAAGATCTAAAAATGTCTGGGTGTTCTGGGTGTTGTTTCAAAGATTTTAACAATACAAGGCATTTGGATATAAGTGAAACTGCTTCACATTCCCAATCAACGTCCTCCATTTGCAAATGGACCACAAAGCCTTACCATTCCTTGTTTCCCACTCCCACAACAAACATAGTTATGTTTCCTTCCTCTCTTAGTATATATTGTTTGCTTGAAGTTGATATTAGCTATTGTGGTTTAAGCCAACTCCCTGATGCTATTGGTTGTTTACGATTGTTAGAAATGTTAAATCTCGCGGGGAATGATTTTGTGACACTGCCTAGCCTTAGGGAGCTTTCCAAACTTGTATATTTGAACTTGGAGAATTGCAAGTGGTTGGAATCTTTGCCTGAGCTTCCTTTCCCTACTACTCTCCAGCAGGATTGTCGAAAGAACAAATATTGGAAGAGAACAGGATTGTTCATTTTGAACTGTCCTAAAATAAGGGATAAGGAACGATGCAGTAGAATGACATTTTCATGGATGACACAGTTCATTCAAGTGAACAAAGAATACCCTGCCTTCCTTGAAATTGGTATTGTCATTCCAGGAAGTGAAATACCAAGTTGGTTCAAAAATCAGAGTGTTAATGGTAGTTCAATACCTGTATCGCCTGTTATGCAGGACAAGGGCAATAATATGGTTGGCTTTTTATGTTTTGCAGTGTTTTCTTTAGCACATCGTTATCTAACAATGACAAGAAGTTCTCAATGGAGACCTCAGATGACACCGGATGCACCATTAGGCCACGTTGCCTATCTTCCAGTAATTGTTGATGGAGATCTTATTAATGTCAAATCAAATCACATCTGGCTAGTCTATATCCCTAGGGAGTCGTCCTATGATGTTACATTACTGCATAATTTTTTCCATGTTCATAGCAATGAAGGCTTGGATGTGGAGGTGAAGAAATACGGGTATCGTTGGGTATATAAACAAGATCTACAAGAGTTCAACTCAACAATGATGCATCCCGAAAATATGTCAACTCTGAAGCGCAAGTTTTTGGTAATTGAAGATGAGGCACAACCACAACCATAG 3180 0.3777 MASSSRDSSTLALKNSYFDVFVSFRGEDTRYNFTDFLFDAFQTQGIFAFRDDNNLPKGESIAPELLRAIQVSQIFIVVFSRNYASSTWCLQELESICECVQVSGKHVLPIFYDVDPSDVRHQKGIYAQAFAKHEHRFQHDSQMVSRWRETLTQVANLSGWDLRDKPQSAEIKNIVQKIIDILDCKSSSVSKDLVGMDSPVQELEKLLLLDSVQDVRVVGICGMGGIGKTTVATVLYDRNSQQFGACCFIDDVSKIYRLHDGPLGAQKQIIDQTLGQEHHNICNHYSATNLIRRRLCHQRALMILDNVGQVEQLEKIAVRREWLGAGSRIIIISRDEHILKQYGVDAVYQIPLLDHTNSLQLLCRKAFKLDYILSSYEGLVNGILNYANGLPLAINVLGSFLYGRDISEWRSALARLRKSPDKDVMNVLRLSFDGLRETEKEIFLHIACFFNGSEKEYVKNVLNCCEFHVDIGLRVLIDKSLVSTEYGIIVMHNLLEELGRKIVQENTSKEPRKWKRLWFDKQLYDVMLENMEKNVEAIVLDHEYEEYSEVDEGMDAVIFKDFSNLRLLIIKYVKVSGSLNRLSNELRYIEWNEYPFMYLPSCFQPNQLVELILKSSSIKQLWEGKRNLPKLRILDLSHSKNLIKMPNFGEFLNLERLNLKGCIKLVMLDPSIGLLRKIVSLNLKDCKSLVSIPNNIFGISSLKDLKMSGCSGCCFKDFNNTRHLDISETASHSQSTSSICKWTTKPYHSLFPTPTTNIVMFPSSLSIYCLLEVDISYCGLSQLPDAIGCLRLLEMLNLAGNDFVTLPSLRELSKLVYLNLENCKWLESLPELPFPTTLQQDCRKNKYWKRTGLFILNCPKIRDKERCSRMTFSWMTQFIQVNKEYPAFLEIGIVIPGSEIPSWFKNQSVNGSSIPVSPVMQDKGNNMVGFLCFAVFSLAHRYLTMTRSSQWRPQMTPDAPLGHVAYLPVIVDGDLINVKSNHIWLVYIPRESSYDVTLLHNFFHVHSNEGLDVEVKKYGYRWVYKQDLQEFNSTMMHPENMSTLKRKFLVIEDEAQPQP 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi559g00018 1059 Pfam TIR domain 18 185 IPR000157 GO:0007165
Vivi559g00018 1059 Gene3D Ribonuclease Inhibitor 755 851 IPR032675 -
Vivi559g00018 1059 Pfam NB-ARC domain 200 421 IPR002182 GO:0043531
Vivi559g00018 1059 Pfam C-JID domain 895 1028 IPR045344 -
Vivi559g00018 1059 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Vivi559g00018 1059 Gene3D Ribonuclease Inhibitor 510 750 IPR032675 -
Vivi559g00018 1059 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 160 IPR035897 -
Vivi559g00018 1059 Gene3D - 352 436 IPR042197 -
Vivi559g00018 1059 SUPERFAMILY L domain-like 491 840 - -
Vivi559g00018 1059 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 713 IPR044974 GO:0006952
Vivi559g00018 1059 Gene3D - 13 184 IPR035897 -
Vivi559g00018 1059 ProSiteProfiles Leucine-rich repeat profile. 792 813 IPR001611 GO:0005515
Vivi559g00018 1059 PRINTS Disease resistance protein signature 294 308 - -
Vivi559g00018 1059 PRINTS Disease resistance protein signature 217 232 - -
Vivi559g00018 1059 PRINTS Disease resistance protein signature 387 401 - -
Vivi559g00018 1059 PRINTS Disease resistance protein signature 626 642 - -
Vivi559g00018 1059 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Vivi559g00018 1059 Gene3D - 185 347 IPR027417 -
Vivi559g00018 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Vivi559g00018 1059 SMART till_3 17 157 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi559g00018 18 819 WRKY Transcription Factor Family AT4G12020 28.830 5.13e-77 276