Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi559g00015 ATGCATCACATGCAGATTCAAGAGCAGCAACTCATCGTATTCAACTTCACGATTTGCAACGGACAACAACAACAATTCCAACAGGAATTCATAGAAAAGGAGGATGGAGAACATATTCGAATACCAAGAGGGAAGGAATTCACGCTACCTGGAGATTGGATGGAAGAGACTATTTTGGATGATGAACTTGAATCAAATATTAACTTTTCTGAAGAGCCACAAATTAATATTGTTGCAGAAGAGAATATTGAGCCTTATGTAGGAATGGAATTTGATTCATTGGAAAAAGTTACAGATTTTTACAGATTATTTTCTAAAGCAAAAGGATTTGGAATTCGTACTCGATCAAGTAAGCCAAATTATTGCATTTTAGTATGTGTTAGGGAGGGTAAACTACCGGTGAAAAGTACGAATGATAATAATGTGGAAGTGAAGAAAACATGTTCAACCATGCGCATGGGATGTCAAGCATCACTTACTATATCAAAAGAAAATAATAGCCACATGTGGACTGTAAAATCATATGACAATAATCACAATCATGCCATGGCTAGTCCCAAAAGTGTATCTTATTTGAGGTGTCATAAAAATATGAATAATGCTGCAAAAAATCTTATTGAGAAGTTTAGTGAAGAAGGTTTGCCTACTGGAAAGGTTGCTTCAATGTTTAAGGAAAGTGATTTAGCTTTTTCTAATAGAGATTGTTGGAATCACATGAGAAATGTTCGAACGAATAATTTGGATATCGGAGATGCACAAGCAGTTTTTAATTATTTCAAGCACAAGCAAGCTCAAAATTCTAATTTTTTCTATGCAATACAGTGTGACGATGAAGCTAGAATGGTAAATTTTTTTTGGGTTGATGCCAGATCAAGGTTAGCTTATCAACATTTTGGAGACGTTGTTACCTTTGACACTACTTATAAAACCAACAAATATAGTATGCCATTTGCCCCATTTACTGGGGTAAACCATCATCTCCAATCAATTTTATTTGGCTGTGCATTATTACAAGATGAATCAGAAATATCTTTTACATGGTTATTTGAAACTTGGCTTGAAGCAATGAATGGAAAAAAACCAATATCAATAATAACTGATCAAGACTTAGCTATTGGAGCTGCAGTGACTAAGGTATTTCCACAAACCCGTCATCGTTTATGTTTGTGGCACATAAGAAAGAAGTTTCCAGAAAAGCTTGCACATATATATCACAAAAAATCAAAGTTTAAGCATGAGCTAAAGAGATGCATTCGAGAATCACCAACTGTAAATGATTTTGAAGTTGATTGGCAGCAAATAATGGATACCTACAATTTACAAGAAAATGATTGGCTTCAGCGGTTGTTTGAAATTCGAGAGTCATGGATACCCGTTTATAACAGAAAATTTTTTTTTGCCGGTATGAGTACTACACAAAGAAGTGAGAACATCAATTCTTTTTTTGACTCTTTTGTTAATTCAACCACAACACTACAAGAATTTGTGGTAAAATTTGAAAAGGCAGTTAATAATCGTTATGAAGCTGAAAAGAGAGAGGACTTTGAGTCTAAACATAAATCACGCATTTTGAGTATCAAATCGAAAATAGAGGAGCATGCGGCATCGATTTATACAAGAAATATGTTTGGAAAATTTCAACATGAGCTTGCACTTGTTAGCCAATTTACAAAGCACAAGATTGAGAAAAATGGCTCACAATATAGGTATCAAATATCCAATTGTTTTAAAGATCGAGACAAATTCATCGTTGATATAAATTTAGAATCAAAGGATGCTACTTGTACTTGTCAGCTTTTTGAATTTATGGGAATATTATGCAGACACATTTTGACAATTTTTCAAACTAAAAATATACTTCAAATTCCCAATCAATATATATTGCATCGCTGGACAAAAGAAGCTAATAGATACATGGAGGTTAGTGTTATGGATTCTCATGATGATGAGGTGGATACTTTGAGAAGCATACACTTGCATCAACAATTTAGCAAATTTTCAAATTTTTCTAAACAATCAAAAGAAGTGTATGAGTTTATTATGGTAGAGTTTGAGCGTATTTGTAATACTTTGGAAACAATGGGATTAAAATTCTCCAATGTAAATGATGCTCCTATAGATTTGCAACAACAAGATGTAGATGACACACATGATAATGTTTCGAATTTTATTATCCAAGACCCCAATGTGTCACAAACAAAAGGTAGAAAGAGAAAAGATTCAGACAGTGCCCGTGTACAAGAAAGATATAAAAGTGGTGTAGAATTGTCGATGGATAAGACACTGGTTAAAAGAAGGGCATGCAAATACTGTGGAGAATATGGTCACTATCAATCAACTTGCAAAAATAAAACAACTTGA 2361 0.3355 MHHMQIQEQQLIVFNFTICNGQQQQFQQEFIEKEDGEHIRIPRGKEFTLPGDWMEETILDDELESNINFSEEPQINIVAEENIEPYVGMEFDSLEKVTDFYRLFSKAKGFGIRTRSSKPNYCILVCVREGKLPVKSTNDNNVEVKKTCSTMRMGCQASLTISKENNSHMWTVKSYDNNHNHAMASPKSVSYLRCHKNMNNAAKNLIEKFSEEGLPTGKVASMFKESDLAFSNRDCWNHMRNVRTNNLDIGDAQAVFNYFKHKQAQNSNFFYAIQCDDEARMVNFFWVDARSRLAYQHFGDVVTFDTTYKTNKYSMPFAPFTGVNHHLQSILFGCALLQDESEISFTWLFETWLEAMNGKKPISIITDQDLAIGAAVTKVFPQTRHRLCLWHIRKKFPEKLAHIYHKKSKFKHELKRCIRESPTVNDFEVDWQQIMDTYNLQENDWLQRLFEIRESWIPVYNRKFFFAGMSTTQRSENINSFFDSFVNSTTTLQEFVVKFEKAVNNRYEAEKREDFESKHKSRILSIKSKIEEHAASIYTRNMFGKFQHELALVSQFTKHKIEKNGSQYRYQISNCFKDRDKFIVDINLESKDATCTCQLFEFMGILCRHILTIFQTKNILQIPNQYILHRWTKEANRYMEVSVMDSHDDEVDTLRSIHLHQQFSKFSNFSKQSKEVYEFIMVEFERICNTLETMGLKFSNVNDAPIDLQQQDVDDTHDNVSNFIIQDPNVSQTKGRKRKDSDSARVQERYKSGVELSMDKTLVKRRACKYCGEYGHYQSTCKNKTT 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi559g00015 786 SUPERFAMILY Retrovirus zinc finger-like domains 763 784 IPR036875 GO:0003676|GO:0008270
Vivi559g00015 786 Pfam SWIM zinc finger 584 618 IPR007527 GO:0008270
Vivi559g00015 786 ProSiteProfiles Zinc finger SWIM-type profile. 582 618 IPR007527 GO:0008270
Vivi559g00015 786 Coils Coil 192 212 - -
Vivi559g00015 786 SMART 26again6 593 620 IPR006564 GO:0008270
Vivi559g00015 786 ProSiteProfiles Zinc finger CCHC-type profile. 768 783 IPR001878 GO:0003676|GO:0008270
Vivi559g00015 786 Pfam MULE transposase domain 301 395 IPR018289 -
Vivi559g00015 786 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 73 692 IPR031052 GO:0006355
Vivi559g00015 786 Pfam FAR1 DNA-binding domain 99 183 IPR004330 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi559g00015 MULE 1.5e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi559g00015 - - vvo:131633311 1602.8