Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi559g00013 ATGGCTGAAGAGAATCAAGCGATTAAGCTATTTGGTGCAACGATAAAACTCCATGATGTTGAAACAAAAGAAAGAGAAGATCAAGATGAAGATCCGACGGTGGAGAAGAGATCAGAGAAGATCATACCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTATTTCAACAACTACAACGTGAATCAGCCTAGACATTTTTGTAAGAGCTGTCAGAGGTATTGGACGGCTGGTGGAGCCCTCCGTAACATACCAGTTGGAGCCGGTCGTCGGAAGGCTAAGCCGCCGGGACATGAAGATAGCGGTTCGAATTCGCCGGAGAGTTGTTTTTATGAAGGTGATTCTGATGATCATGGACATCAGTGGCACGTTGAAACGGTTCCTGAGAGTGGTTTCCGGGAAGTTTTTTCCGGTAAACGGCGGAGGAAGAATTCAGGTTGTTATTCGTTAGCTATGATGTAA 465 0.4495 MAEENQAIKLFGATIKLHDVETKEREDQDEDPTVEKRSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNIPVGAGRRKAKPPGHEDSGSNSPESCFYEGDSDDHGHQWHVETVPESGFREVFSGKRRRKNSGCYSLAMM 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi559g00013 154 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Vivi559g00013 154 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Vivi559g00013 154 MobiDBLite consensus disorder prediction 86 110 - -
Vivi559g00013 154 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Vivi559g00013 154 PANTHER CYCLIC DOF FACTOR 2 24 100 IPR045174 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi559g00013 3 150 C2C2-Dof Transcription Factor Family AT1G29160 49.419 5.46e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi559g00013 zf-Dof 2.4e-32 No_clan