Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi558g00031 ATGTTGGTGAATGAGGAGGAAAACTTTCATGTTGTGGACATAGAGAACAATGGTTGTCACCGGAGTCACGAGGAGGGTGACTCCGGTGATAGGTCAGAGATTGTGGGAGTGGATGAAAAACAAAGAGGTTCTGATGATTCATCTGAATCTGTTGAGTCAGGTGAATCTGTGGTGTTGGATCTGGATGGTGTAGTTGGTTGTGATGTTGATGTTAAGGTGCATTTGGATAAGGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGGATTCCTATTGAGCTTGGATGTTCTTGTAAAGAGGATTTGGCTGCTGCTCATACACATTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAACAAAACTTGTGAAATCTGTGGCTCAATAGCACACAATGTAGCTGGTGCTTTTGAAGTTCAAACGACAGACCAATTGAATGAAGCAAGTGATCCCTCTATTGGACCACCATCCGGACCTTCACCGCCGATTGAAACTCGAAATTTTTGGCAGGGACACCGGTTTTTGAATTTCCTGCTAGCATGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTTAATGTCCCCTCTTGA 618 0.4256 MLVNEEENFHVVDIENNGCHRSHEEGDSGDRSEIVGVDEKQRGSDDSSESVESGESVVLDLDGVVGCDVDVKVHLDKVERDCRICHLSMDMTNHESGIPIELGCSCKEDLAAAHTHCAEAWFKIKGNKTCEICGSIAHNVAGAFEVQTTDQLNEASDPSIGPPSGPSPPIETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi558g00031 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Vivi558g00031 205 ProSiteProfiles Zinc finger RING-CH-type profile. 74 140 IPR011016 GO:0008270
Vivi558g00031 205 MobiDBLite consensus disorder prediction 14 54 - -
Vivi558g00031 205 PANTHER ZINC FINGER, RING-CH-TYPE 21 204 - -
Vivi558g00031 205 MobiDBLite consensus disorder prediction 14 49 - -
Vivi558g00031 205 Pfam RING-variant domain 82 133 IPR011016 GO:0008270
Vivi558g00031 205 SMART ringv_2 81 134 IPR011016 GO:0008270
Vivi558g00031 205 SUPERFAMILY RING/U-box 79 136 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi558g00031 47 205 C3H Transcription Factor Family AT5G05830 60.116 6.60e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi558g00031 - - mtr:11413730 296.589