Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi558g00019 ATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGATGGATCCAAGTTGGTTTGTTGAAGAGAGTCATAACACAGAATGGAGTAGAGAAGATAACAAGAAATTTGAAAGTGCTCTTGCTATATATGATAATGATACACCAGATAGATGGTTCAAGATTGCTGAGATGATTCCTGGTAAGACTGTTTTTGATGTGATTAAACAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATCGAAGCTGGTAATGTTCCGATTCCGGGCTATCTTGCCTCTTCTTTCACTTTTGAAGTTGTGGAAAATCAAAACTATGATGGAAATAGAAGAAGACATGGAAGTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGGGTTCCTTGGACCGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTAAAGTACGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAGACTCCGACGCAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGAAAAGATAAAAGAAGACCAAGCATTCATGATATAACAACTCTTAGTCTCACAGAAACTTCTTCTGCATCATCAGATAAGAACAAACAAAAAATGTGCTGGAGTAGTAATAGTCACTACAATGATGGATCACTTCAAGGGCAAGATCTATATGATTGCTCTTTTCATGAATCTTATGCTAAGATGAAAATCCCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTTTAA 795 0.3836 MDLETLYSPYFMMDPSWFVEESHNTEWSREDNKKFESALAIYDNDTPDRWFKIAEMIPGKTVFDVIKQYRELEEDVSEIEAGNVPIPGYLASSFTFEVVENQNYDGNRRRHGSVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLSLTETSSASSDKNKQKMCWSSNSHYNDGSLQGQDLYDCSFHESYAKMKIPGFATASRDFNKGAVFGIHAL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi558g00019 264 CDD SANT 26 72 IPR001005 -
Vivi558g00019 264 FunFam Transcription factor SRM1 19 86 - -
Vivi558g00019 264 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Vivi558g00019 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vivi558g00019 264 Gene3D - 125 176 - -
Vivi558g00019 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 225 IPR043363 -
Vivi558g00019 264 MobiDBLite consensus disorder prediction 190 212 - -
Vivi558g00019 264 MobiDBLite consensus disorder prediction 175 212 - -
Vivi558g00019 264 SMART sant 123 173 IPR001005 -
Vivi558g00019 264 SMART sant 23 75 IPR001005 -
Vivi558g00019 264 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vivi558g00019 264 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vivi558g00019 264 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vivi558g00019 264 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Vivi558g00019 264 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vivi558g00019 264 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vivi558g00019 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vivi558g00019 264 CDD SANT 126 170 IPR001005 -
Vivi558g00019 264 Gene3D - 19 86 - -
Vivi558g00019 264 FunFam transcription factor MYB1R1 125 176 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi558g00019 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi558g00019 - - cam:101492144 443.351