Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi558g00016 ATGTCTCAACAGCAACACCTCCGTGTTGATCCCAAAATCTGGCAGAAAATCGCCGGAGATTCCTTCACTGTTCCAAAACTTCATTCCAGAATATACTATTTCCCTCAAGGTCATTTACAACATGTCTGTCCTAACACTCAAACACTCGATCGTTGCCGTCCGTTGATTCTCTGCACAGTCTCCGCCGTTGATCTCTTTGCAGATCCTGAAACTGATCAAGTTTATGCAAAATTACTCCTCACTCCCGTAATTGACGGCAGTGTTGTTCCTCTTGAGTCTGACAATGGAGCCGATGGTGATCAGATTGTTTCCTATGCCAAGACTCTCACTAATACTGATGTTAGAAGCGGGGCTGTACTCTACATTCCTAGGGCCGGCGCTGAGGCGATCTTACCAGCACTCCCGCCGCTTGACTCTAGAAACCAATCGCGGTTTCAAGATATATCTGTCAAGGACGTTTGCGGTGTAGTCTCGGAAATTCGCCACTTCCACCGTCTATGTCCCTTTCAACACCTGTTCACCGTTGGCTGGAGTGGATTTGTTAGCAAGAAGAAACTGGTTGTCGGTGATACAGTTGTTTTTGTTAAAAACTCGAATGGAAATATCTCCATTGGAATTCGTAGGAATGGGAAGTTGGCTGCCGCTGCAAAAATGACAGAAAAGGAAGTTAAGTTGGCAGTAGAATTGGCAGAGAAGAACGCCGCGTTTGAAGTTGTGTACTATCCAACGGTAGGTGGTTTTGATTTTGTGGTGGGAGCGAAGATAGTGGAGGATGCAATGAAAGTTAATTGGAGTCGTTGGATGAGAGTTACACACATGGTGAAGAATGATGATACTTCCAAGGGATGCTCCATTTTTAATGGTACAATATGTGCAATCTCCCATCCTTCAACTCGTCCGTGGCGCATGCTTCAGGTTGAATGGGATGAACCACATGTCCCTGAGAATCTAAAGCAAATAAGTCCTTGGCAAGTTGAAATTATTCGTAACAGACGTACACCACCATATATAATGTCTCCCCCAACAAAAAGGTTTAGAGGTGCTCAAGCTTCTGTCTCGTCATCCATTCCAAATAACATGCAAAATCTTGTTTCCACTCCAACTTCTTCCAACTTCAAAACCAAAAAAACTACTCCTGGTTCAATAGTGTTATTTGGTAAGACCATACAACCTATAGAAAGTGATTTGTATAATTCTGATAGCAAAGGAGACCATGAAGTTGAAGGCATTCATAAAACTTAA 1242 0.4332 MSQQQHLRVDPKIWQKIAGDSFTVPKLHSRIYYFPQGHLQHVCPNTQTLDRCRPLILCTVSAVDLFADPETDQVYAKLLLTPVIDGSVVPLESDNGADGDQIVSYAKTLTNTDVRSGAVLYIPRAGAEAILPALPPLDSRNQSRFQDISVKDVCGVVSEIRHFHRLCPFQHLFTVGWSGFVSKKKLVVGDTVVFVKNSNGNISIGIRRNGKLAAAAKMTEKEVKLAVELAEKNAAFEVVYYPTVGGFDFVVGAKIVEDAMKVNWSRWMRVTHMVKNDDTSKGCSIFNGTICAISHPSTRPWRMLQVEWDEPHVPENLKQISPWQVEIIRNRRTPPYIMSPPTKRFRGAQASVSSSIPNNMQNLVSTPTSSNFKTKKTTPGSIVLFGKTIQPIESDLYNSDSKGDHEVEGIHKT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi558g00016 413 CDD B3_DNA 104 208 IPR003340 GO:0003677
Vivi558g00016 413 ProSiteProfiles B3 DNA-binding domain profile. 105 210 IPR003340 GO:0003677
Vivi558g00016 413 Gene3D - 263 332 - -
Vivi558g00016 413 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 360 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi558g00016 413 SUPERFAMILY DNA-binding pseudobarrel domain 100 208 IPR015300 -
Vivi558g00016 413 Pfam B3 DNA binding domain 106 209 IPR003340 GO:0003677
Vivi558g00016 413 Pfam Auxin response factor 226 304 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi558g00016 413 Gene3D - 102 209 IPR015300 -
Vivi558g00016 413 SMART B3_2 105 210 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi558g00016 6 349 B3 DNA Binding Superfamily AT1G77850 34.005 6.48e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi558g00016 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi558g00016 - - vvo:131619497 648.277