Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi558g00014 ATGTCTCAACAGCAACACCCCCGTGTAGATCCAAATATCTGGCAGAAATTCGCCGGAGATTCCTTCACTGTTCCCAAACTTCATTCCAAAGTATATTATTTCCCTCAAGGTCATTTACAACATGTCTGTCCTAACACTCAACCACTCGATGGTTGTCGTCCGTCGATTCTCTGCATAGTCTCCGCCGTTGATCTACTTGCAGATCCTGAAACTGATCAAGTTTATGCAAAATTACTCCTCACTCCCGTAATTGACGGAAGTGTTGTTCCTCTTGAGTTTCACAATGGACCCGATGGTGATCAAATTGTTTCCTATGCCAAGACTCTCACTAATACTGATGTTAGAAGCGGGGCTGTACTCTACATACCTAAGGCCGGTGCCGACTCGATCTTACCAGCGCTCCCGCCGCTTGACTCTAGAAACCAATCGCGGTTTCAAGATATATCCGTCAAGGACGTTTGCGGTGTAGTCTCGCAAATTCGCCACTTCCACCGCCTATGTCCCTTTCAACACCTGTTCACCATTGGCTGGAGTGGATTTGTTAGCAAGAAGAAACTTGTTGTCGGTGATACAGTTGTTTTTGTTAAAAACTCGGCTGGAAATATATCCATTGGAATTCGTAGGAATGGGAAGTTGGCTGCCGCTGCAAAAATGATAGAAAAGGAAGTTAAGTTGGCAATAGAATTGGCAGAGAAGAAGGCAGCGTTTGAAGTTGTGTACTATCCAACGGTAGGTGGTTTTGATTTTGTGGTGGGAGCGAAGATAGTGGAGGATGCAATGAAAGTTAATTGGAGGTGTGGGATGAGAGTTACACACATGGTGAAGAATGACGACACTTCTAAGGGATGCTCCATTTTTAATGGGAGAATATCTAATCTCTCCTCTCGTTCTACTCGTCCATGGCGCATGCTTCAGGTTAAATGGGATGATCCTCATGTCCCTGAGAATCTAAAGCAATTATGTCCTTGGCAGGTTGAACTTATTAATTCTAACCCACCTATATCAGATATACAATTCCCTCCAACAAAAAAGTTGAGAGGTGCTCAAGGTTCTGTGTTGTCAACTGAGCAAAATATTAGCATTTCTCACACCTCTAGTACTTTGAACTCCTTTAAAATAAAGAATGTTGATATTGACAATTGCAATAACAAGAAAACTAGACCGGGTTCAATAATGTTATTTGGTAAGATGATACAACCTATTGAAAGGGATTTGTATGAGTCTTCTGATATTGTAGGAGACAATAGTTGTAAGAGGAGTAATGAAACTGATAAAACTTGTTAA 1284 0.419 MSQQQHPRVDPNIWQKFAGDSFTVPKLHSKVYYFPQGHLQHVCPNTQPLDGCRPSILCIVSAVDLLADPETDQVYAKLLLTPVIDGSVVPLEFHNGPDGDQIVSYAKTLTNTDVRSGAVLYIPKAGADSILPALPPLDSRNQSRFQDISVKDVCGVVSQIRHFHRLCPFQHLFTIGWSGFVSKKKLVVGDTVVFVKNSAGNISIGIRRNGKLAAAAKMIEKEVKLAIELAEKKAAFEVVYYPTVGGFDFVVGAKIVEDAMKVNWRCGMRVTHMVKNDDTSKGCSIFNGRISNLSSRSTRPWRMLQVKWDDPHVPENLKQLCPWQVELINSNPPISDIQFPPTKKLRGAQGSVLSTEQNISISHTSSTLNSFKIKNVDIDNCNNKKTRPGSIMLFGKMIQPIERDLYESSDIVGDNSCKRSNETDKTC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi558g00014 427 Gene3D - 102 209 IPR015300 -
Vivi558g00014 427 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 360 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi558g00014 427 SMART B3_2 105 210 IPR003340 GO:0003677
Vivi558g00014 427 Pfam Auxin response factor 226 303 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi558g00014 427 CDD B3_DNA 104 194 IPR003340 GO:0003677
Vivi558g00014 427 SUPERFAMILY DNA-binding pseudobarrel domain 100 208 IPR015300 -
Vivi558g00014 427 Pfam B3 DNA binding domain 106 209 IPR003340 GO:0003677
Vivi558g00014 427 Gene3D - 263 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi558g00014 6 354 B3 DNA Binding Superfamily AT1G77850 34.653 1.85e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi558g00014 B3 6.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi558g00014 - - vvo:131619497 804.668