Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi554g00011 ATGAAGAACTCAGGTGTTACCGTGGATGAAGCATTAGGGTTTCTTAGTGCAGTAAAAGATGCATTTCAATATGACAAGGAAAAGTATGATCAATTTTCAAAAGTCCTTAAAGATTTCAGTGCTAAAAGAATTTACATAAGTCGTGTCAAAGTAAAATTGAAGACCTTGTTTAAAGGGCATAAACATTTAATTTTGGAATTCAACTCTTTCATGTCGAAGAAGCGTCAAATCACACTTTCATTAGATAATGGTGAACTTGCCGAACTTCCTTGGGACGTGCTTGATATCATTTGCAAAACCCTAGATTTTGACGACCTCTTTTCGTTTTCGGGTGTTTGCAAGAATTGGAGGACTTTCCATAAATCAAATTTCTTGTCATCCCAAGAACCATTGCTTGTTCGTTTGAATGGTTATAATACTGATTCATATTCCTTTATTAGCGTACCCAATAAAAAAGTTTATGATTTGAAAATGATGAGTTGCCTCAAGCCTCCCAACTGCGTCTATGTTGGAGTTTCCAGCGGATATTTCATCTTGGCCCATAGAAATAATTCATTTGTTCTATTCAATCCATTCACAAGAAAGAAAATGGAAATCAATGCCGCCTTTACCGTTAATCATAAGACATTTTATCGGTATGAAGTCATGCTTGCTTTCGAGAAATGCTCTGAGGAATTTGTCTTGGTGGTTTTATGCAAAGAGTCTAGCTGTTTGTATGTCTATCAATCTCGATATTATGATTGGTTGATTTATTCAACATTAAAATCAGAGGAGGTGGTAGTCGACTTTGTGGTTTCCAACAATATAATATATGTTGTCACTAACAATGGCAACATAGGGGTACTCAACTTGAATTCTGGAAATATTAAATTTCTAAACCTCAAGAATACTCCCGAGAAAGTTCGCTATAGAGATCCCTCACAAATATCCTTTAAGTTGGTTAATTGTGATGAGCAACTTTTACTGATTGATTTTCGATTATGGTACTCATCAAGAAGGGGAGTTTACAAGATAGATTTGTCAACTACAAATTACGTTAAACTGAAAACTTTGGGTGACATTGCATTATTTTATGTTACTGGTCAAAATTGTCGGGCATTGAGCAACCCAGAGAGATTTGGGTATCGGAGCAGTTACGTGTATGAAGTAAATTGTTTTTCGCAATGTATGTATGATTGGAATGATCATAGAGCAAAATTATATCCACATGGAGGTGGAGACTTGAGTTTCTTTGATTGGTGTTTTAGACATTCAATATGCCAAGGTTCTGCTCGGGACTTCAATTTCTTTGATTGGTGTTTTAGACATTTAAAATATGAAGTTGATTATTCTTTAGTTGAATAA 1344 0.3497 MKNSGVTVDEALGFLSAVKDAFQYDKEKYDQFSKVLKDFSAKRIYISRVKVKLKTLFKGHKHLILEFNSFMSKKRQITLSLDNGELAELPWDVLDIICKTLDFDDLFSFSGVCKNWRTFHKSNFLSSQEPLLVRLNGYNTDSYSFISVPNKKVYDLKMMSCLKPPNCVYVGVSSGYFILAHRNNSFVLFNPFTRKKMEINAAFTVNHKTFYRYEVMLAFEKCSEEFVLVVLCKESSCLYVYQSRYYDWLIYSTLKSEEVVVDFVVSNNIIYVVTNNGNIGVLNLNSGNIKFLNLKNTPEKVRYRDPSQISFKLVNCDEQLLLIDFRLWYSSRRGVYKIDLSTTNYVKLKTLGDIALFYVTGQNCRALSNPERFGYRSSYVYEVNCFSQCMYDWNDHRAKLYPHGGGDLSFFDWCFRHSICQGSARDFNFFDWCFRHLKYEVDYSLVE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi554g00011 447 PANTHER OS09G0392200 PROTEIN 74 395 IPR044619 -
Vivi554g00011 447 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Vivi554g00011 447 SUPERFAMILY F-box domain 84 126 IPR036047 GO:0005515
Vivi554g00011 447 Pfam F-box domain 87 118 IPR001810 GO:0005515
Vivi554g00011 447 ProSiteProfiles PAH domain profile. 4 74 IPR003822 GO:0006355
Vivi554g00011 447 Gene3D - 87 125 - -
Vivi554g00011 447 SMART fbox_2 89 129 IPR001810 GO:0005515
Vivi554g00011 447 CDD F-box_SF 87 117 - -
Vivi554g00011 447 ProSiteProfiles F-box domain profile. 83 135 IPR001810 GO:0005515
Vivi554g00011 447 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Vivi554g00011 447 Gene3D Paired amphipathic helix 3 75 IPR036600 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi554g00011 4 97 WRKY Transcription Factor Family AT4G12020 44.681 3.08e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi554g00011 PAH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi554g00011 - - vvo:131606327 651.358