Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi554g00008 ATGTCGCTCAACATGAAAACCCTAACCCAAGCTCTAGCAAAAACCGCAGCAGTAATCGAGAAAAGGGTGCAAACAACGGTGCAGGAGGTAACCGGTCCGAAGCCACTTCAAGACTACGAGCTTCTCGATCAGATCGGTTCGGCCGGACCGGGTTTAGCTTGGCGGCTTTATTCGGCACGGGCTCGGGATCCGTCGCGGCAGCATCAATATCCTGTTGTGTGCGTTTGGGTGTTGGATAAACGGAGTTTGTCGGAGGCGAGAATGCGGGCGGGATTGACGAAAGCGGCGGAGGATTCGTTTTTGGATTTGATTCGGACGGATGCGGGGAAGCTTGTTAGGCTTAGGCATCCTGGAGTTGTGCATGTTGTTCAGGGACTTGATGAGAGTAAGAACGCGATGGCGATGGTCACGGAGCCGTTGTTTGCTTCTGTTGCGAATACGCTTGGGAATCTGGATAATGTTGCTAATGTTCCTAAGGATCTTAGGGGAATGGAAATGGGATTGTTGGAGGTGAAGCATGGTTTACTTCAGTTGGCGGAATCGTTGGATTTTCTTCACAATCAGGCTCATCTTATTCATCGAGCTATATCTCCTGAGAATGTTTTTATCACATTGAGCGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTCCTGCTTCGCAGAACCATGGCGAGTTATCTAATCAGCAAGCCTTCCATTATGCTGAATATGACGTTGAAGACTCTATTTTGCCACTTCAGCCATCGATTAATTACACTGCTCCCGAGATGGTGAGGAGCACTGCTTCTTCAGCTGGGTGCTATTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTGATTGCTCGCAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGAACTAGTTCCTGACTTGCAAAGGATGCTCTCTTCAAATGAATCTTACAGGCCAAGTGCGATGGATTTCACAGGCTCACAGTTTTTTCGGAATGACACTAGGTTACGTGCTCTGCGCTTCTTGGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCCTTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTGCGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTAGTGATACAGCCAATGATTCTACCAATGGTTCTGACCATTGCAGAGTCTCAGGACAAAAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCTTAAGCACTGCTTCTGGTGACACAATGCTACTGCTTCTGAAGCATGCTGATCTAATAATAAACAAGACTACTCAAGAACATTTAATTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATAATGATGCACGTTTACAAGAAGAGGTCCTGAAAAAGACTGTATCCCTCACCAAACAACTTGATCCCCAGCTGGTAAAGCAAGTGATTTTACCCCGTGTTCATGGACTAGCACTCAAAACAACGGTTGCCGCGGTTAGAGTCAACGCTTTGCTGTGCCTAGGAGAAATGGTTAACCGACTTGATAAAAATGCTGTCCTGGAAATCTTGCAAACTATTCAGCGCTGTACCGCTGTTGACCATTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGAGTAGAATATGTTGCTGAACATGTTCTTCCATTGCTTATGCCACTCCTGACTGCTCAACAACTCAATGTTCAACAGTTTGCCAAATATATGCTTTTTGTCAAGAATATACTCCAGAAGATAGAAGAGAAGCGTGGAGTTGTTGTGACTGATTCTGGGCTCCCAGAGGTAAAATTATCTCCTGCAGTTAATGGCCTTCAGGTTGATGCTCCGAGGACAATCAACAGCACTATTTCTACTCCAACAAAAAGCAGCTCCTCTTGGGATGCAGATTGGGGTCCCAAAACAACGAGAACAGCTAATTATGTTACAAATCCTACTAATACATCTAGTCAGCCAGTGATAGGAAACCCTGTGGGCCAAGTAGCATCTTTACAAAATCCTTTGTCCTTATCTGGTGTATCTAATCAACAGACAGCCAAATCATGTCCTTCAGTAGATATAGAGTGGCCGCCCCGTGCATCTTCAGGAGTTACCTCACAATTTGGCGATACCGAAAGGCAAACAGTTGCAGCAGGAACCTCATCCACATCTAATAATGAAGATGATGATCCTTTTGCCGACTGGCCTCCGCGCACTAGTGGCCCATTATCTGGTGGATTTGGAAATTCTAACAATGGTACTTCAGGAATGCCACTAAACAACTTAGGGCATAATTCAATGACAAGCATTTCAAGCAATCTTCAAGCCAGCAACAATTGGTCTGTCAACCCGAATAATGGCTTTCAACCTCAGAGTCCTATTGGGCTCCTAAAACAAAGCCAGGCCTTTCCAGCATCAAATGTTGTTTCGTCATCATATAATAACGTTAAATCAACCGATCTTGGATCAATATTTTCTTCCAACAAGAATGAGCAAATTGCACCTAGACTTGCTCCACCCCCTTCAACCACAGTGGGTAGAGGGCGGGGAAGAGGGAGGGGTGCTACTTCAACCAAACAGCCCTCTCATACAAAGTCAAGCACTGAGCAGCCACACCTTTTGGATTTGTTGGGGTAA 2724 0.4497 MSLNMKTLTQALAKTAAVIEKRVQTTVQEVTGPKPLQDYELLDQIGSAGPGLAWRLYSARARDPSRQHQYPVVCVWVLDKRSLSEARMRAGLTKAAEDSFLDLIRTDAGKLVRLRHPGVVHVVQGLDESKNAMAMVTEPLFASVANTLGNLDNVANVPKDLRGMEMGLLEVKHGLLQLAESLDFLHNQAHLIHRAISPENVFITLSGAWKLGGFGFAIPASQNHGELSNQQAFHYAEYDVEDSILPLQPSINYTAPEMVRSTASSAGCYSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSSNESYRPSAMDFTGSQFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTASGDTMLLLLKHADLIINKTTQEHLISHVLPMIVRAYDDNDARLQEEVLKKTVSLTKQLDPQLVKQVILPRVHGLALKTTVAAVRVNALLCLGEMVNRLDKNAVLEILQTIQRCTAVDHSPPTLMCTLGVANSIFKQYGVEYVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKNILQKIEEKRGVVVTDSGLPEVKLSPAVNGLQVDAPRTINSTISTPTKSSSSWDADWGPKTTRTANYVTNPTNTSSQPVIGNPVGQVASLQNPLSLSGVSNQQTAKSCPSVDIEWPPRASSGVTSQFGDTERQTVAAGTSSTSNNEDDDPFADWPPRTSGPLSGGFGNSNNGTSGMPLNNLGHNSMTSISSNLQASNNWSVNPNNGFQPQSPIGLLKQSQAFPASNVVSSSYNNVKSTDLGSIFSSNKNEQIAPRLAPPPSTTVGRGRGRGRGATSTKQPSHTKSSTEQPHLLDLLG 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi554g00008 907 MobiDBLite consensus disorder prediction 650 695 - -
Vivi554g00008 907 Pfam Protein kinase domain 108 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi554g00008 907 MobiDBLite consensus disorder prediction 856 907 - -
Vivi554g00008 907 CDD PK_SCY1_like 45 346 - -
Vivi554g00008 907 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 36 895 - -
Vivi554g00008 907 Gene3D Transferase(Phosphotransferase) domain 1 149 347 - -
Vivi554g00008 907 MobiDBLite consensus disorder prediction 772 799 - -
Vivi554g00008 907 MobiDBLite consensus disorder prediction 884 900 - -
Vivi554g00008 907 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi554g00008 907 MobiDBLite consensus disorder prediction 710 799 - -
Vivi554g00008 907 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Vivi554g00008 907 MobiDBLite consensus disorder prediction 729 758 - -
Vivi554g00008 907 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi554g00008 907 Gene3D - 348 621 IPR011989 -
Vivi554g00008 907 SUPERFAMILY ARM repeat 312 608 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi554g00008 92 335 AGC Kinase Gene Family AT3G10540 23.077 2.83e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Vivi554g00008 Pkinase 3.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi554g00008 K17541 - gmx:100796211 1426.38