Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi554g00003 ATGGTTGTGGTGATTAACGAAATGCCTAAAAGAAAGAAAGAGCAACATCATGATGATGATGATGACAATGACTCATTGTCACATAATAATAAGAAACCTCGTCGTGTGGTTTGGTCTGATGATCTCCATGCAAAGTTTGTTGATGCTGTTAACCTTATTGGCATTTCAAATTCAAAGGTTGTTCCGAGTAAAATAGTTGCTTTAATGAATGTTGATGGAATTACTACCTCTCATGTCGCTAGCCATCTCCAGAAATATAGACACAAAAAGAAAAAGGCTGAACATCAAGCTGATAGAGATAGGGTTCCTTCAACAAAGATTCTTCAGCCTACTCAATCTCAAAACATCATCAACACCTCCTTTAACATCCCTCCACCATCATACAAGTTTCATGCAAATCAAAACTCAACTTTACTCCTCCCTATCAAAAAGCCTGTCCATCAATCTCACACACAAATGTACTCTCCAACCGGTTTCAACATGAATGGGGTTACGCCTTCAACACTAATTCAATCTCAATATATCAACAACCATCCACCACCATCCACTTTTCCTACATATCATTACGCCTCTAGTGTTCCAACTCCACTTGGATTTCCAACGACCTTCGACTTCCATGATGTAGGGACATTTGATGGATCATCTGCTTCTTCAACACTCATTCAACCTATCAACACCTCGTCGTCAATCATCCATCCACCACCGTACAAGTCTCCAATATATCATCAAAGCCCTACTTTTCCAACTGATGTTAACCAATCTACAACTCTACTTGGATTTCCAACAACATCCCACTTCCATGATGACATTAGGGCTACTAACTGCCCTTTTGTTGGACCTTCTTCAAAAAGTACAAGCATTTTGGATTATGAAGATCTGAGAAGGGAACCTCAGCTACTTCCGTTTCCCCACAATTCTTTGCCGGTATTGGAGTCTCACAAAACAAGTCAAAATAGTCCAATGAACAATTCACAGCAGGCACATAATGTAGAGCCAATTATTGTTGGATCATCTGTTTCTTTGGAAGACACAAACAATAATCTGTGGAATGATGATACTTTTATTGACTTTTCGGTTGAAGAAACTGATCCTCACTCCTCAGACTTTAGAGGACATTAG 1119 0.3932 MVVVINEMPKRKKEQHHDDDDDNDSLSHNNKKPRRVVWSDDLHAKFVDAVNLIGISNSKVVPSKIVALMNVDGITTSHVASHLQKYRHKKKKAEHQADRDRVPSTKILQPTQSQNIINTSFNIPPPSYKFHANQNSTLLLPIKKPVHQSHTQMYSPTGFNMNGVTPSTLIQSQYINNHPPPSTFPTYHYASSVPTPLGFPTTFDFHDVGTFDGSSASSTLIQPINTSSSIIHPPPYKSPIYHQSPTFPTDVNQSTTLLGFPTTSHFHDDIRATNCPFVGPSSKSTSILDYEDLRREPQLLPFPHNSLPVLESHKTSQNSPMNNSQQAHNVEPIIVGSSVSLEDTNNNLWNDDTFIDFSVEETDPHSSDFRGH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi554g00003 372 MobiDBLite consensus disorder prediction 7 32 - -
Vivi554g00003 372 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 325 IPR044841 GO:0003700|GO:0006355
Vivi554g00003 372 SUPERFAMILY Homeodomain-like 32 92 IPR009057 -
Vivi554g00003 372 Gene3D - 29 93 - -
Vivi554g00003 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 91 IPR017930 -
Vivi554g00003 372 MobiDBLite consensus disorder prediction 1 32 - -
Vivi554g00003 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 90 IPR006447 GO:0003677
Vivi554g00003 372 FunFam Two-component response regulator 28 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi554g00003 10 87 Response Regulator Gene Family AT3G16857 56.410 1.99e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi554g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi554g00003 - K14491 vvo:131604558 345.125