Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi554g00002 ATGTTCAATACAATCACTATGGAATCCTGCAATTGTGTGGAGCCACAATGGCCAGCTGATGATTTATTAATGAAGTATCAATATATCTCTGATTTCTTCATTGCACTTGCTTATTTCTCAATCCCGCTCGAGCTTATTTACTTCGTTAAGAAATCAGCGGTATTTCCGTATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTGATTAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCGATTGTAATGGCCACCGCTAAGATTTTAACTGCTGCGGTATCGTGTGCCACTGCGCTTATGCTTGTACATATTATTCCCGATCTATTAAGCGTTAAAACTAGGGAGTTATTTTTGAAGAAAAAGGCTGCAGATCTTGATAGAGAAATGGGTATGATTCGTACGCAGGAAGAAACCGGCCGACATGTTAGGATGTTGACTCATGAGATCAGAAGTACTCTTGATAGACATACAATACTGAAGACAACTCTTGTTGAACTCGGTAGAACTCTTGGACTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTTTCTTACACGTTGCGACAGCAGAACCCTGTTGGATATACAGTGCCGATCAATCTTCCTGTGATCAACCAAGTATTTAGTAGCAACCGCGCAGTTAAAATTTCATCTAATGTTCCAGTTGCTAGATTACGGCCTCATGCTGCAAAATACATGCCTGGGGCCGTAGTTGCTATTCGGGTGCCTCTCTTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCGTCTGATAGTGCTCGACAATGGCATGTTCATGAGTTAGAGCTGGTCGAGGTAGTTGCTGATCAGGTAGCTGTTGCGCTTTCGCATGCGGCAATTTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTTATGGAGCAGAATGTTGCGCTTGATATGGCTAGAAGAGAAGCAGAAACAGCAATTCATGCTCGCAATGACTTTTTGGCTGTAATGAATCATGAGATGAGAACTCCGATGCATGCAATTATTGCGCTCTCTTCATTGTTACAGGAAACAGATATGACTGCCGAGCAACGTCTGATGGTGGAAACAATATTGAAAAGCAGCAACTTATTGGCTACGCTCATCAACGATGTTTTAGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAACATCAAATTTTAACCTTCATTCAATGTTTAAAGAGGTCCTTAATTTGATTAAACCCGTCGCATGTGTTAAAAAGCTGTCGCTTACTTTACATTTCGCGTCAGATTTGCCGGTGTATGCAATTGGTGATGAAAAGCGTCTCATGCAAACTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGAAGCATTTCAATCACCGCATTTGTTGCAAAGCCGGAATCCTTCAGGGATATTAGATTTCCTGATTTCCTACCAGTGCCAAGTGATGGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAGTCAATCCACAAGATATCCCGAAGCTATTCACCAAGTTTGCGCAAAACCAATTAGCGACAAGAAATCCTATTGGAAATGGGCTTGGCCTTGCAATTTGTAGAAGGTTTGTGAATCTCATGGAAGGCCATATTTGGATCGAAAGCGAGGGTATTGGCAAAGGATGTACAGTCAGTTTTATTGTAAAACTCGGAATTCCAGACAGATCAAATGAATTTAAACTACCTTACATACCGAAAGCTCTGGTAAATCATGGATCTACAAACATTGCCGGTCTCAAAATTCTTGTCTTGGATGATAATGGGGTGAGCAGGTCAGCCACAAAGGGGCTTCTTATGCATTTAGGATGCGACGTCACAACTGTAGGCTCGAGCGAAGAATGCCTGCGTGTTGTTTCACAGGAACACAAAGTGGTCTTCATGGATGTCTGTACAGGGTTAGATGGTAATGAATTAGCGGTTCGTATACAAGAGAAGTTCGCGAATCGTCAAGATAGACCACTTATAGTTGCTCTCACCGGAAACACCAACAAGTGGACTAAAGAAAACTGTATGAGAGCTGGTGTGAATGGCCTTGTCTTAAAACCTGTTTCTGTTGAGAAGATGAAGGGTGTTTTAACAGAACTCTTGGAGCGGCGATTTGTGTTTGAAACAGTTTAA 2238 0.4178 MFNTITMESCNCVEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMATAKILTAAVSCATALMLVHIIPDLLSVKTRELFLKKKAADLDREMGMIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINQVFSSNRAVKISSNVPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLQETDMTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSFQLETSNFNLHSMFKEVLNLIKPVACVKKLSLTLHFASDLPVYAIGDEKRLMQTLLNVVGNAVKFSKEGSISITAFVAKPESFRDIRFPDFLPVPSDGHFYLRVQVKDSGSGVNPQDIPKLFTKFAQNQLATRNPIGNGLGLAICRRFVNLMEGHIWIESEGIGKGCTVSFIVKLGIPDRSNEFKLPYIPKALVNHGSTNIAGLKILVLDDNGVSRSATKGLLMHLGCDVTTVGSSEECLRVVSQEHKVVFMDVCTGLDGNELAVRIQEKFANRQDRPLIVALTGNTNKWTKENCMRAGVNGLVLKPVSVEKMKGVLTELLERRFVFETV 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi554g00002 745 ProSiteProfiles Response regulatory domain profile. 620 736 IPR001789 GO:0000160
Vivi554g00002 745 SMART gaf_1 164 323 IPR003018 GO:0005515
Vivi554g00002 745 FunFam Ethylene receptor 613 745 - -
Vivi554g00002 745 Gene3D - 142 314 IPR029016 -
Vivi554g00002 745 SMART HKATPase_4 461 592 IPR003594 -
Vivi554g00002 745 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 335 415 IPR036097 GO:0000155|GO:0007165
Vivi554g00002 745 CDD HisKA 347 410 IPR003661 GO:0000155|GO:0007165
Vivi554g00002 745 Gene3D - 414 597 IPR036890 -
Vivi554g00002 745 SUPERFAMILY GAF domain-like 164 325 - -
Vivi554g00002 745 Pfam Response regulator receiver domain 621 729 IPR001789 GO:0000160
Vivi554g00002 745 ProSiteProfiles Histidine kinase domain profile. 356 592 IPR005467 -
Vivi554g00002 745 FunFam Ethylene receptor 1 414 595 - -
Vivi554g00002 745 Pfam GAF domain 164 313 IPR003018 GO:0005515
Vivi554g00002 745 Gene3D - 613 745 - -
Vivi554g00002 745 Pfam His Kinase A (phospho-acceptor) domain 350 414 IPR003661 GO:0000155|GO:0007165
Vivi554g00002 745 SMART HisKA_10 349 414 IPR003661 GO:0000155|GO:0007165
Vivi554g00002 745 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 403 590 IPR036890 -
Vivi554g00002 745 FunFam Ethylene response sensor 142 314 - -
Vivi554g00002 745 PIRSF Ethylen_sen_hybr_HK 2 742 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vivi554g00002 745 SUPERFAMILY CheY-like 616 738 IPR011006 -
Vivi554g00002 745 Gene3D - 315 413 - -
Vivi554g00002 745 SMART REC_2 619 732 IPR001789 GO:0000160
Vivi554g00002 745 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 7 738 - -
Vivi554g00002 745 PRINTS Bacterial sensor protein C-terminal signature 551 569 IPR004358 GO:0016310|GO:0016772
Vivi554g00002 745 PRINTS Bacterial sensor protein C-terminal signature 517 531 IPR004358 GO:0016310|GO:0016772
Vivi554g00002 745 FunFam Ethylene receptor 1 316 412 - -
Vivi554g00002 745 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 461 590 IPR003594 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi554g00002 7 743 Miscellaneous Gene Families AT1G66340 78.243 0.0 1189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi554g00002 GAF 3.3e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi554g00002 K14509 - gmx:100795340 1306.2