Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi552g00011 ATGCCTTCAGTTTCCTCCAAACGCAGATTCAGATCTCCTGCTTCACCTACTCCGGCCGCCGCTTCTCCGCCCTGTCGGAAATCTCCCCGTCATTCCATCGCTGCATCTCCCAATTCTGCTACATCTGTAGTTCGCAAACTCATCACCGATGAGAATCTAATCGAATCTCATGAAACAGTTGCTGTGAAATCCAAATGGAATCCCAAAGATGGAGAGCAATTGAGGATTGTGAAGGAGGTGTTGCACTTGTCTACTGCACCGTCCACCATAGTGTGCCGTGAGGAGGAGCAAGATGTGGTGCTAGGGTTTTGCAAAGGATCTGTTGAGCATGAAAAGGCTGGGAGTCTATACATATGTGGTTGTCCTGGAACAGGGAAATCGTTATCTATGGAGAAAGTTAAAGTGAATTTACTCAATTGGGCTACAGAGGCAGGATTGCCGATGCCGGATGTTTTATCTGTAAATTGTACATCATTATCAAACACATCTGATATTTTTGCCAAGATACTTGGATTGCACAAAACTCTGGGGAAGAAGGGTTCAGGCACAGCCTTGCAGCAACTTCAGAAAATGTATTCTCATGAATCGCGTACAAAGAACATGATATTGATAGTGGCAGATGAATTAGATTATCTAATAACCAAAGACAGAGCTGTTCTCCATGATCTTTTCATGCTTACCACTTTCCCGTTTTCCAGATGTATACTGATAGGTGTAGCTAATGCAATTGACCTAGCAGATCGATTTCTTCCAAGGCTTACTGCATTAAATTGCAAGCCTACTGTTGTAACTTTTCGAGCATACACAAAAGATCAGATCCTTAGAATTCTTAAAGAAAGACTAAATGAACTTCCTTACACTGTCTTCCAACCACAAGCATTAGAACTATGTGCTAGAAAAGTTGCCGCAGCTTCTGGAGATATGCGGAATGCTCTTTCCATATGCAGGAGTGCAATTGAGATGTTAGAAGCAGAAATTAGAGATTCTGCTTCCAATTTGAATGCCTTGGAAGAGAAATCATCCTCGGAACAAAATCTTCCTACAGCTCTGGATGTTGTGAAAAAACAAGAACTTGATATGGTAAGGATTGATCATATGGCTCTTGCCTTGTCCAAAACATATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTACCATGAAACATTTCCGAGGAGCCAAGAAAGACTCAATCCTTGGCGAGTTATATAAATCTTATGCGGCGATATGCAAATCATCACTAATTCCCCCAGCTGGAATTATGGAATTTTCAAACATGTGCAGAGTGTTAAATGACCAGGGCCTTATAAAACTAGGACAATCCCGAGATGATAAATTGAGAAGAGTGACACCCAAAGTAGATGAAGGAGATATTACCTTTGCATTGCAGGGGATCCGCTTTTTTCGAAATTGTCTTCAATGA 1452 0.4174 MPSVSSKRRFRSPASPTPAAASPPCRKSPRHSIAASPNSATSVVRKLITDENLIESHETVAVKSKWNPKDGEQLRIVKEVLHLSTAPSTIVCREEEQDVVLGFCKGSVEHEKAGSLYICGCPGTGKSLSMEKVKVNLLNWATEAGLPMPDVLSVNCTSLSNTSDIFAKILGLHKTLGKKGSGTALQQLQKMYSHESRTKNMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTALNCKPTVVTFRAYTKDQILRILKERLNELPYTVFQPQALELCARKVAAASGDMRNALSICRSAIEMLEAEIRDSASNLNALEEKSSSEQNLPTALDVVKKQELDMVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSTMKHFRGAKKDSILGELYKSYAAICKSSLIPPAGIMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTPKVDEGDITFALQGIRFFRNCLQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi552g00011 483 SMART Cdc6_C_2 393 472 IPR015163 -
Vivi552g00011 483 FunFam Cell division control protein 71 256 - -
Vivi552g00011 483 Gene3D - 382 468 IPR036388 -
Vivi552g00011 483 Gene3D - 260 381 - -
Vivi552g00011 483 Pfam AAA lid domain 290 324 IPR041083 -
Vivi552g00011 483 Coils Coil 319 339 - -
Vivi552g00011 483 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 41 481 - -
Vivi552g00011 483 Pfam CDC6, C terminal winged helix domain 393 471 IPR015163 -
Vivi552g00011 483 Pfam AAA domain 111 228 IPR003593 GO:0016887
Vivi552g00011 483 PIRSF Cdc6 3 483 IPR016314 GO:0006270|GO:0051301
Vivi552g00011 483 SUPERFAMILY "Winged helix" DNA-binding domain 378 481 IPR036390 -
Vivi552g00011 483 FunFam Cell division control protein 385 475 - -
Vivi552g00011 483 CDD Cdc6_C 386 468 IPR015163 -
Vivi552g00011 483 FunFam Cell division control protein 257 382 - -
Vivi552g00011 483 Gene3D - 70 259 IPR027417 -
Vivi552g00011 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 328 IPR027417 -
Vivi552g00011 483 CDD AAA 96 257 - -
Vivi552g00011 483 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi552g00011 16 482 Core DNA Replication Machinery Family AT2G29680 59.916 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi552g00011 K02213 - gmx:100791200 718.383