Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00061 ATGGGTATGGCTGCAGAATCACAGTTTCATGTCTTGGCTGTTGATGATAGTATCATAGATAGAAAACTCATTGAAAGACTCCTCAAAACCTCTTCTTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTCTTGGGCCTGTGTGAAAATGACCAGAATCATCATACCAGCACAAATACACCGTCTGTCTTTCCTAATAATCATCAGGAAGTGGAAGTTAATCTTGTTATAACAGATTACTGTATGCCCGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGAATCATCATCATTGAGAAACATACCAGTGGTTATTATGTCATCTGAAAATGTGCCTTCAAGAATTAATAGATGTTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAACCTGTAAGGCTATCAGATTTGAGTAGACTTAAACCTCACATGAAGAAAAACAAAGTGAAAGATCCAAGAAATGAAACAGAAGAAAAGATTGAAAATTCAGAAATTCTACTTCCACAACAAGAAGCACCAAAATCTCAATATTCACATTCAGAATCAGAATCAGAAACACAGTTACAAGCACATTCAACTATTGATCAACAGCAACAACCACTACAACAAAACAACAATAATAACAAGAGAAAGAGTATGGAACAACAACAAGGACTTTCATCTGAAACTGATAGAACAAGACAAAGATACAGTGGTATAGCTACTGTTGTATGA 726 0.3567 MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDQNHHTSTNTPSVFPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLSRLKPHMKKNKVKDPRNETEEKIENSEILLPQQEAPKSQYSHSESESETQLQAHSTIDQQQQPLQQNNNNNKRKSMEQQQGLSSETDRTRQRYSGIATVV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00061 241 ProSiteProfiles Response regulatory domain profile. 10 149 IPR001789 GO:0000160
Vivi54g00061 241 SMART REC_2 9 145 IPR001789 GO:0000160
Vivi54g00061 241 Gene3D - 10 237 - -
Vivi54g00061 241 MobiDBLite consensus disorder prediction 172 241 - -
Vivi54g00061 241 Pfam Response regulator receiver domain 11 141 IPR001789 GO:0000160
Vivi54g00061 241 MobiDBLite consensus disorder prediction 147 241 - -
Vivi54g00061 241 SUPERFAMILY CheY-like 8 144 IPR011006 -
Vivi54g00061 241 CDD REC_typeA_ARR 11 144 - -
Vivi54g00061 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 218 IPR045279 GO:0009736
Vivi54g00061 241 MobiDBLite consensus disorder prediction 147 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00061 1 241 Response Regulator Gene Family AT3G57040 62.249 2.24e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi54g00061 Response_reg 2.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00061 K14492 - gmx:100814494 330.102