Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00057 ATGGTTGCATTCTGTTCTTCTCAATTCAAATACTCAACCATGGGATGGCTACAAGAGTTAGAACCTGCACAGTCCTTAAATATTAGCCATAAGGAGAAGACCTATGCAAATAATTTAGAGTACTCTTTACCTCAATATCATCAATTCTCTTCACTTAAGCAACAACAAGTTGAGATTGAAACGCCACCACCATCCCCTAAGCTTATGGTGAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAAAAAGATCAATAGCTTGATTTCTTCGCTTCGTTCACTTCTTCCCGATCAAGATCAAACGAAAAAAATGAGCATTCCGGTAACAATATCAAGAGTCTTAAAATACATACCGGAATTACAAAAGCAGGTTGAAGGATTAACTAAGAAAAAAGAAGAGCTTCTATCAAGAATTTCTAGGCAAGAATATGAAGCGAACAAAGAATCACAAAAGAAAATAATTCCCAATTACAATTCTTCTTTTGTGGTTTCAACAAGTAGGCTTAATGATAGTGAGCTTGCCGTTCATATTTCATCTTATGAGGCTCATAAGATTCAATTATCAGAGATCATGTTGTGCTTAGAAAATAATGGACTTGTTCTACTAAGTTCTTCTTGTTCTAAAACATTTGGAGGGAGACTCTTTTACAACTTGCATTTTCAGGTGGGGAATGCTCAAAGTTTAGAGTGTGATGTTCTAATTCAGAAGCTTTTGCCAATATATGAAAAGCAGCAATGTAACCAATTTAGTGTTGGAAGATAA 768 0.3581 MVAFCSSQFKYSTMGWLQELEPAQSLNISHKEKTYANNLEYSLPQYHQFSSLKQQQVEIETPPPSPKLMVKKLNHNASERDRRKKINSLISSLRSLLPDQDQTKKMSIPVTISRVLKYIPELQKQVEGLTKKKEELLSRISRQEYEANKESQKKIIPNYNSSFVVSTSRLNDSELAVHISSYEAHKIQLSEIMLCLENNGLVLLSSSCSKTFGGRLFYNLHFQVGNAQSLECDVLIQKLLPIYEKQQCNQFSVGR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00057 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Vivi54g00057 255 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
Vivi54g00057 255 Gene3D - 65 155 IPR036638 GO:0046983
Vivi54g00057 255 FunFam Transcription factor ORG2 66 152 - -
Vivi54g00057 255 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 227 - -
Vivi54g00057 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Vivi54g00057 255 SMART finulus 76 128 IPR011598 GO:0046983
Vivi54g00057 255 Coils Coil 119 146 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00057 39 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.248 1.60e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi54g00057 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00057 - - psat:127129084 396.741