Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00056 ATGGTTGCATTCTATCTTCCTCACTTCTCTTACTCAAACATGGGATGGAACTTAGAGGAGATAGAGCCTATAGAGTCCTTAAATATTGTCCCTAAGGAGAAGAACTTTGTTTCCTCTTTACCGCAATATCATCTATTCTCTTCACCGAAGCAACAACATATTGAGATTGGAACGCCATCACCATCCCCGACCCCTAAGCTTATGTTGAAGAAGCTTAACCACAATGCCAGCGAACGTAATCGCCGTAAGAAGGTCAATAACTTGATTTCTTCACTTCGTTCACTTCTTCCAGCTGAAGATCAAACGAAAAAAATGAGCATTCCAGTAACAATTTCAAGAGTCTTAAAATACATACCAGAATTACAAAAGCAGGTGGAAGGATTAACTAAGAAAAAAGAAGAGCTTCTATCAAGAGTTTCTAGGCAAGAATATGCGGTGAACAAAGAATCACAAAGGAAAATTAATCCTAATTATGATTCTTCTTTTGTTGTTTCAACAAGTAGGTTTAATGATAATGAGCTTGCTATTCATATTGCATCTTATGAGGCTTACAAGATTCCATTATCTGAGATCTTGTTGTGTTTGGAAAATAATGGACTTGTTCTACTAAATTCTTCTTGTTCTAAAACATTTGGAGGGAGACTCTTCTACAACTTGCATTTTCAGGTGGAGAAAACTCAAAGTTTAGAGTGTGATGTTCTAATTCACAAGCTTCTGTCAATATATGAGAAGCAATGCAATCCTAGTGTTGGAAGGTAA 759 0.365 MVAFYLPHFSYSNMGWNLEEIEPIESLNIVPKEKNFVSSLPQYHLFSSPKQQHIEIGTPSPSPTPKLMLKKLNHNASERNRRKKVNNLISSLRSLLPAEDQTKKMSIPVTISRVLKYIPELQKQVEGLTKKKEELLSRVSRQEYAVNKESQRKINPNYDSSFVVSTSRFNDNELAIHIASYEAYKIPLSEILLCLENNGLVLLNSSCSKTFGGRLFYNLHFQVEKTQSLECDVLIHKLLSIYEKQCNPSVGR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00056 252 SMART finulus 75 127 IPR011598 GO:0046983
Vivi54g00056 252 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 226 - -
Vivi54g00056 252 Coils Coil 118 138 - -
Vivi54g00056 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Vivi54g00056 252 Gene3D - 65 153 IPR036638 GO:0046983
Vivi54g00056 252 FunFam Transcription factor ORG2 65 152 - -
Vivi54g00056 252 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Vivi54g00056 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 140 IPR036638 GO:0046983
Vivi54g00056 252 CDD bHLH_AtORG2_like 70 142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00056 67 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.619 4.59e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi54g00056 HLH 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00056 - - vvo:131614671 382.874