Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00055 ATGGTTGCATTCTGTTCTCCTCAGTACTCATACTCAAACATGGGATGGCTCTTCCAAGAGTTAGGGCCTGCAGAGTCTTTAAATATTATCGATAAGGAGAAGAACTATGTAACTAATTTAGAGTACTCTTCACCTCAATATCATCAATTCTCTTCACTAAAGCAACAACATGTTGAGATTGAAACGCCACCACCATCCCCTAAACATACAGTGAAGAAGCTTAACCATAATGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATAACTTGATTTCTTCACTTCGATCACTTCTTCCCGGTGACGATCAAACGAAAAAATTGAGCATTCCGGTAACAATTGCAAGAGTCTTAAAATACATACCGGAATTACAAAAGAAGGTGGAAGGATTAGCAAAGAAAAAAGAAGAGCTTCTATCAAGAATTTCTAGGCAAGAATATGCAGTGAACAAAGAATCACAAAGGAAAATAATTCCAAGTTATAATTCTTCTTTTGTGGTTTCAACAAGTAGGCTTAATGATAATGAGCTTGCTATTCATATTTCATCTTATGAGGCTCACAAGATTCCATTATCTGAGATTTTGATGTGTTTAGAAGATAATGGATTTTTTCTATTAAATTCTTCTTCTTCTAAAACCTTTGGAGGGAGGCTCTTCTATAACTTGCATCTTCAGGTGGATAAAACTCAAAGGTTAGAGTGTGATGATCTTATTCAGAAGCTTTCGTCAGTCTATGAGAGGCAGCGAAGTAATCAAGTAGAGTTGGGAGCTAAAGATCAGACGATCAGGAGTGTTATGATATATTAA 804 0.3657 MVAFCSPQYSYSNMGWLFQELGPAESLNIIDKEKNYVTNLEYSSPQYHQFSSLKQQHVEIETPPPSPKHTVKKLNHNASERDRRKKVNNLISSLRSLLPGDDQTKKLSIPVTIARVLKYIPELQKKVEGLAKKKEELLSRISRQEYAVNKESQRKIIPSYNSSFVVSTSRLNDNELAIHISSYEAHKIPLSEILMCLEDNGFFLLNSSSSKTFGGRLFYNLHLQVDKTQRLECDDLIQKLSSVYERQRSNQVELGAKDQTIRSVMIY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00055 267 MobiDBLite consensus disorder prediction 60 83 - -
Vivi54g00055 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 142 IPR036638 GO:0046983
Vivi54g00055 267 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 242 - -
Vivi54g00055 267 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Vivi54g00055 267 Gene3D - 65 155 IPR036638 GO:0046983
Vivi54g00055 267 Coils Coil 120 140 - -
Vivi54g00055 267 SMART finulus 77 129 IPR011598 GO:0046983
Vivi54g00055 267 FunFam Transcription factor ORG2 67 152 - -
Vivi54g00055 267 CDD bHLH_AtORG2_like 72 144 - -
Vivi54g00055 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00055 11 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.725 1.93e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi54g00055 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00055 - - psat:127129084 445.662