Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00041 ATGCATCCATGGCTTCAAACCGTGATCGATATGTGCAGGGGGAAGTTCAAAGGAGATCTCAAGGCTTTTGAGGAAGATCCTCTCGGAATATCGATCAACATCGAAAGACACTGCTTCGGAGAATTTTCCATGGCGAGCGTTCAAGCCAATGAATTCATGGAAGATCGAAGCCAGGTTGAAGTTGCCTCTAACAACGCACTCTTTCTCGGTGTTTACGACGGTCACGGTGGCTACCTGGCTTCACGATTCATCGCTGAAAATCTCTTCAAGAACCTCTTAAGGATTGCTCACGAGAATGGAAATACTATAACACAAGATACTCTAAGCAGCGCTGTTTCTGATACTGAAAAGCAATTCATCAATTATGTCCGCACGGAATATATTGCAATGCCAAGTCTAGCAAAAGCTGGCTCATGCTGTCTTACTGCAGTTATATGGAAAAAGACTCTATACGTCGCGAATCTTGGAGATTCGCGTGCCATAATTGTTTCTATGGTTGATGGAAAACCTGTTGTCGAACAGCTGACAAGAGATCACAACTGTAATGATATAGCTATTAGAGAAGAACTCAGGGCAATGCATCCAAATGATCCCAACATTGTGTTCAAGAGGAATGGATCGTATCGCGTTAAAGGCATCATTGAGGTTTGTAGAACTATTGGTGATGCATATTTGAAGAGGCCTGATTTTACGTTTCACGATTCGTTTCCCAAAGATACGAACGGGCCTCCACTTCCTGATAAATGTGTGCTATCATCAGAACCAGAGATGCGTTCTAGAGCTTTAAGAAATAATGATAAGTTTCTGATATTTGCTTCTGATGGACTTTGGGATCTCATGTCAAATGAACAAGCTGCTCTAATTGTTTCAAAGAATCCAAGAAATGGAATTGCGAAAAGGCTTTTGAGTGTTGCGCTAACGGAATCTGCTAGAAGAAGGGGATTTTCCTATCAGAATGTTCAAGCTGCTAGTCCGGGACGCGGTAATGCGAGCAGGAGGTCTTTTCATGATGATATAAGTGTGATTGTTGTGTTCTTAGAGAAACCGTCGATTCTGAGGAAACGCGTGCTTAATATGTCTTACAGCGGCTTAAATCCGACGCCTGAAAAATCTGATTTCGAAGGCTCTGGATTAAGCTCTTTGATCCTGAGTCCATTGAGTCCTCGGGGTCTGAAGGCTAGTTTCAGAAGACGGTCAAAATCAGTTGACAGTCCTCTGGGTGGAAGCTCTCAGGGCGAGGACACTGACAGGCTTATTGATCAGAGCTCTCGTCAAACTGCTCAAGGCCGTTGGGCGTCTCTGAGACAGAAGCTCTTTGGACGATTTCGAAGATAA 1335 0.4375 MHPWLQTVIDMCRGKFKGDLKAFEEDPLGISINIERHCFGEFSMASVQANEFMEDRSQVEVASNNALFLGVYDGHGGYLASRFIAENLFKNLLRIAHENGNTITQDTLSSAVSDTEKQFINYVRTEYIAMPSLAKAGSCCLTAVIWKKTLYVANLGDSRAIIVSMVDGKPVVEQLTRDHNCNDIAIREELRAMHPNDPNIVFKRNGSYRVKGIIEVCRTIGDAYLKRPDFTFHDSFPKDTNGPPLPDKCVLSSEPEMRSRALRNNDKFLIFASDGLWDLMSNEQAALIVSKNPRNGIAKRLLSVALTESARRRGFSYQNVQAASPGRGNASRRSFHDDISVIVVFLEKPSILRKRVLNMSYSGLNPTPEKSDFEGSGLSSLILSPLSPRGLKASFRRRSKSVDSPLGGSSQGEDTDRLIDQSSRQTAQGRWASLRQKLFGRFRR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00041 444 ProSiteProfiles PPM-type phosphatase domain profile. 41 346 IPR001932 -
Vivi54g00041 444 SMART PP2C_4 26 344 IPR001932 -
Vivi54g00041 444 MobiDBLite consensus disorder prediction 395 430 - -
Vivi54g00041 444 Gene3D - 29 352 IPR036457 -
Vivi54g00041 444 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Vivi54g00041 444 CDD PP2Cc 42 346 IPR001932 -
Vivi54g00041 444 Pfam Protein phosphatase 2C 62 314 IPR001932 -
Vivi54g00041 444 SUPERFAMILY PP2C-like 37 347 IPR036457 -
Vivi54g00041 444 MobiDBLite consensus disorder prediction 403 430 - -
Vivi54g00041 444 PANTHER PROTEIN PHOSPHATASE 39 344 IPR015655 GO:0004722|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00041 34 373 PP2C-type Phosphatase Gene Family AT5G06750 47.262 8.03e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00041 K01102 - csv:101222146 330.872