Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00030 ATGGCGCCAAAAAGAAAACATTCCTCAATCTTCATCGGTAATTGTGAGGTTACTGTCGAAGCCAGCACTTTCACATGCAATTCCAGTTCCAACAACCTCTTAATCTCTCTTCCTCAAAGCGGAAATATTAAAGTATCTGCGGCACAGGACATTTCTGCAAACCACAAAAACACTTCTGAGTCTGAAAAAACAGAACACGAGTTCCAGCTGCTTAATCCGAAAGATGTTGACGATATTAGCAAATCCTACCTCCAGGAAGTATTGCAGATGTATATGACAGAGCTACCTGGAATGAATTATGCTGCAAATACTGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTACTTCTGAAATCCAGTTTGGCTAGAGATTCAGGAAAGGTTATAGCTGCAATCACTTATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCATCTATTGTTTATAGAGCTGAAGAGGAGACTTCAAAATGTTGGCATTCGCTCTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAACAGGGTTTTTCATCAATAGCAGAGGTGGATACCAGAGGTAGAGCCCGCAGGTTACCTATAAAAGCTGATATTCGCAAAACATTATGCTTACCCGGTGGTTCAACACTGATGGTTTGCCACTTAAAGAAGGAATTGCTAGATGACAATACTAACTCTGGGAAGCGTCTCCTCTCACAGCCTCATCAGAACTCATCTCCACCTGCAATTATTGAAAATGAGCAGTGTGAAGTTTCAGATGAGCTACTCATTGATTTTATATCATCCCATAGAAGAGACACAGCTCAAAGTAAACCTAAGGCTTTGGCAAAAGACGGATCTTCACGGGGACATGGAAAACTGAGTGGCCACAACTCTAAGAGCTGCTGCAATGACACTGTTCCCTCTAACACAACAAATTGTTCTCAATCTACAAAAGTTGAGAAGAGGGCCTGGGAAGCCTCTTTATCCTCGTTGAAGTCAAAGAGAGTGAAGGGAAGCCAGTTAGTTGACTGTCGATCAGATTCTAGCTGGGGTTTTATGCCGGAGGCTGAAAGGGCCAATCCTTGTTATGTAGAAGCCTCTCATGGTGATACTTTAATTACAAAGAAGTCTGAAAAATGTATTGGAGACCATATGCATTTTGAAGCTCCGATCAACCTAGAACCGCCATCAACTAAACAATGCTTTAGAATCATGTTGATGAATATCAATGATGATGCTAAGAAAACACAGCTTGCAAAGGTGATTGAAGACCTTGGTGGAACTGTTGCCGCTGATGGAAGCACAACCACACATGTTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGCACCGCTCTCTGTTCAGGTGCCTGGGTGGTCTCATCAAGTTGGTTAAAAGAGAGTTTTCGTACAGGCAGATTTGTTGATGAATCGCCTCACATACTGAATGATGAGGATTATTTGTTGAAGTACAAATTGGATTTAAGAAGTGCAGTTTTCCGAGCAAAAGCTTGTCCCCATGCTTTATTCAAGGGGTATAATATTTGTATTGCAGCTAATGTTCAAACTCCTGCAGAAACTCTGTCTGCTATTGTTAGCTCTGCTGGTGGTAATGTTATTAGTGGACTTGAAAAAGTAACTGAAGTATCAACAACGATCTTTGTGACATGTGAAGAAGATATAAACGAAGCAATGATGGCTTCAAAGAAAGGTATAAGAACTTTCAATAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAAGCCCCTCAATTTGTAGAGTCCTTATAA 1872 0.4092 MAPKRKHSSIFIGNCEVTVEASTFTCNSSSNNLLISLPQSGNIKVSAAQDISANHKNTSESEKTEHEFQLLNPKDVDDISKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSSLARDSGKVIAAITYQIIPADTEYAEIPLAAVNAIYQRKGFGHLLFIELKRRLQNVGIRSIFCWGDKESEGFWLKQGFSSIAEVDTRGRARRLPIKADIRKTLCLPGGSTLMVCHLKKELLDDNTNSGKRLLSQPHQNSSPPAIIENEQCEVSDELLIDFISSHRRDTAQSKPKALAKDGSSRGHGKLSGHNSKSCCNDTVPSNTTNCSQSTKVEKRAWEASLSSLKSKRVKGSQLVDCRSDSSWGFMPEAERANPCYVEASHGDTLITKKSEKCIGDHMHFEAPINLEPPSTKQCFRIMLMNINDDAKKTQLAKVIEDLGGTVAADGSTTTHVVTGKVRKTLNFCTALCSGAWVVSSSWLKESFRTGRFVDESPHILNDEDYLLKYKLDLRSAVFRAKACPHALFKGYNICIAANVQTPAETLSAIVSSAGGNVISGLEKVTEVSTTIFVTCEEDINEAMMASKKGIRTFNSEWFMNCVMRQELDLEAPQFVESL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00030 623 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 320 616 - -
Vivi54g00030 623 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 74 225 IPR000182 GO:0016747
Vivi54g00030 623 CDD NAT_SF 129 191 - -
Vivi54g00030 623 MobiDBLite consensus disorder prediction 294 323 - -
Vivi54g00030 623 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 68 212 IPR016181 -
Vivi54g00030 623 Gene3D BRCT domain 415 529 IPR036420 -
Vivi54g00030 623 ProSiteProfiles BRCT domain profile. 426 505 IPR001357 -
Vivi54g00030 623 Gene3D BRCT domain 530 622 IPR036420 -
Vivi54g00030 623 Pfam BRCA1 C Terminus (BRCT) domain 433 492 IPR001357 -
Vivi54g00030 623 ProSiteProfiles BRCT domain profile. 528 612 IPR001357 -
Vivi54g00030 623 CDD BRCT_PAXIP1_rpt6_like 532 613 - -
Vivi54g00030 623 SMART BRCT_7 530 610 IPR001357 -
Vivi54g00030 623 SMART BRCT_7 416 495 IPR001357 -
Vivi54g00030 623 Gene3D - 64 231 - -
Vivi54g00030 623 MobiDBLite consensus disorder prediction 294 312 - -
Vivi54g00030 623 SUPERFAMILY BRCT domain 425 507 IPR036420 -
Vivi54g00030 623 SUPERFAMILY BRCT domain 530 613 IPR036420 -
Vivi54g00030 623 Pfam Acetyltransferase (GNAT) family 130 205 IPR000182 GO:0016747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vivi54g00030 Acetyltransf_1 1.1e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00030 - - vvo:131612402 1217.22