Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00007 ATGGCAATGAAGAGACAAAGAAACAACGAAGGAACAACAGACAACACAGATTTAGCAAACTGCTTAATGCTACTGTCTTGTCCGCAACAACAGAAAGCCTTTGAAAACGGAGTTTACGAGTGCAAAACATGCAACAAAAAATTCTCATCTTTTCAAGCACTCGGTGGCCATAGAGCTAGTCACAAGAGAATGAAGCTGGCTGAAGGGGAGGAGCTTAAAGAGCAAGCTAAGTCTCTTAGTTTATGGAACAAACCCAAGATGCACGAGTGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTGGGAGGACACATGAGAAAACATAGAGCTGTTATGAGTGAAGGGTTTTCTTCTATCAATGAGATTATTGCGAAGATTCCAGTTTTGAAGAGATCGAATAGTAAGAGAGTTATGGGATTTGACTTGAATTTGACGCCATTGGAGAATGATGACTTGATGCTTGGAATGAAGTCGCCTTTAACGCCTATTCCACTTTCTTTGTTTTGA 513 0.4035 MAMKRQRNNEGTTDNTDLANCLMLLSCPQQQKAFENGVYECKTCNKKFSSFQALGGHRASHKRMKLAEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRAVMSEGFSSINEIIAKIPVLKRSNSKRVMGFDLNLTPLENDDLMLGMKSPLTPIPLSLF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00007 170 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vivi54g00007 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 110 IPR036236 -
Vivi54g00007 170 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vivi54g00007 170 PANTHER ZINC FINGER PROTEIN ZAT5 3 151 - -
Vivi54g00007 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vivi54g00007 170 Gene3D Classic Zinc Finger 36 110 - -
Vivi54g00007 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vivi54g00007 170 Pfam C2H2-type zinc finger 88 112 - -
Vivi54g00007 170 Pfam C2H2-type zinc finger 38 62 - -
Vivi54g00007 170 SMART c2h2final6 88 110 IPR013087 -
Vivi54g00007 170 SMART c2h2final6 39 61 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00007 3 152 C2H2 Transcription Factor Family AT2G37430 48.148 1.45e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi54g00007 zf-C2H2_6 9.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00007 - - aprc:113870747 215.698