Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00006 ATGAAGAGACAAAGAGAAGTTGAAGGGTTAGAAAACATAAATCTAGCAAATTGTCTAATGATGCTTTCTTATCCCCAACAACAACAAAGGAATAGATTACCAGAGCTAAAAAGTTATGGGCCTGTAGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGACACAGTGCTAGCCATAAAAGGTCAAAACTAGAAGGTGGTGAATTCATGAAAACAAATGCTACATCTTTGAGTTTGGGAAATAAACCCAAAATGCATGAATGTTCAATTTGTGGACAAGAGTTTTCTTTGGGGCAAGCACTAGGTGGACACATGAGAAGGCATAAAGCTATGATCAACCAAGAGTTTTCTTCAATGGAAAAAGTTGTTGTGAAATTACCAGTTTTAAAGAGATTGAATAGTGTAAGAGTTATGTGCTTGGACTTGAACTTGACACCGTTGGAGAATGATTTGAAGTTATTGTTTGGAAATATGGCTTCGAATCTTGATGTTTTGGTCTGA 522 0.3621 MKRQREVEGLENINLANCLMMLSYPQQQQRNRLPELKSYGPVEYECKTCNKKFSSFQALGGHSASHKRSKLEGGEFMKTNATSLSLGNKPKMHECSICGQEFSLGQALGGHMRRHKAMINQEFSSMEKVVVKLPVLKRLNSVRVMCLDLNLTPLENDLKLLFGNMASNLDVLV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00006 173 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vivi54g00006 173 SMART c2h2final6 44 66 IPR013087 -
Vivi54g00006 173 SMART c2h2final6 93 115 IPR013087 -
Vivi54g00006 173 Gene3D Classic Zinc Finger 43 69 - -
Vivi54g00006 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vivi54g00006 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 156 - -
Vivi54g00006 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vivi54g00006 173 Pfam C2H2-type zinc finger 44 68 - -
Vivi54g00006 173 Pfam C2H2-type zinc finger 93 117 - -
Vivi54g00006 173 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi54g00006 173 SUPERFAMILY beta-beta-alpha zinc fingers 44 115 IPR036236 -
Vivi54g00006 173 Gene3D Classic Zinc Finger 75 134 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00006 1 163 C2H2 Transcription Factor Family AT2G37430 48.503 2.16e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi54g00006 zf-C2H2_6 3.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi54g00006 - - gmx:100806997 238.039