Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi54g00005 ATGAAGAGACAAAGAGAAGTTGAAGGGTTAGAAAACATAAATCTATCAAATTGTCTAATGATGCTTTCTTATCCCCAACAACATCAAAACAAGATTAAGCCACAGCAAAAGAGTTTTGGACCAGCAGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGGCACAGTGCAAGCCATAAAAGATCAAAAGTAGAAGGTGGTGAATTCATGAAAACAAATGCTACGTCTTTGAGTTTGGGGAATAAACCCAAAATGCATGAATGTTCCATTTGTAGACAAGAGTTTTCTTTGGGTCAAGCACTAGGTGGACACATGAGAAGGCATAAAGCTATGATCAACCAAGAGTTTTCTTCAATAGAAAAAGTTGTTGTGAAATTACCAGTTTTAAAGAGATTGAATAGTGCAAGAGTTATGTGCTTGGACTTGAATTTGACACCGTTGGAGAATGATTTGAAGTTATTGTTTGGAAATATGGCTCCAAATCTTGATGTTTTGGCCTGA 522 0.364 MKRQREVEGLENINLSNCLMMLSYPQQHQNKIKPQQKSFGPAEYECKTCNKKFSSFQALGGHSASHKRSKVEGGEFMKTNATSLSLGNKPKMHECSICRQEFSLGQALGGHMRRHKAMINQEFSSIEKVVVKLPVLKRLNSARVMCLDLNLTPLENDLKLLFGNMAPNLDVLA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi54g00005 173 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vivi54g00005 173 SMART c2h2final6 44 66 IPR013087 -
Vivi54g00005 173 SMART c2h2final6 93 115 IPR013087 -
Vivi54g00005 173 SUPERFAMILY beta-beta-alpha zinc fingers 44 115 IPR036236 -
Vivi54g00005 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vivi54g00005 173 PANTHER ZINC FINGER PROTEIN ZAT5 12 157 - -
Vivi54g00005 173 Pfam C2H2-type zinc finger 93 117 - -
Vivi54g00005 173 Pfam C2H2-type zinc finger 44 68 - -
Vivi54g00005 173 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi54g00005 173 Gene3D Classic Zinc Finger 41 115 - -
Vivi54g00005 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi54g00005 1 171 C2H2 Transcription Factor Family AT2G37430 46.591 1.20e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi54g00005 zf-C2H2_6 4.1e-08 CL0361