Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi549g00001 ATGGTGCTGATAGAACAGGAGAAGACTGACGATCCAAACGCGAATCCATCAAACGCTACTGCCGGCAACGACGCCTCCGACGGCTTCGAAACCGCCAGTGAGGCCGATCTCGATAGCGACGGTGATGACGGCGGAGCTAGCAGCCGAGAAGAATTGCAGCACAGTGATCAACCGCAGCAGACGCCGAAGCGGACAGAGGGAGAACAGGAACAAGATGTTCATCAGCAAAGCATTTCCTCCGAGGAGGCTTTGATCAATGAAGATGAATTGAGACAGAAAGCATTGGATGAAGCGAATGAAGCAAAAGTAGAAGGTAACAAACTCTTTGTTGATGGGAAGTATGAGGAGGCATTATCTCAATATGACCATGCCTTACAAGTTGCACTAGACGTTCCTTCATTTGTGGAAATACGCTCAATATGCTATGCAAACCGTGCCGTGTGCTTTTTAAAACAGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAGCTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATCCGTCGACTAGAGCCCCTTGCTGCAGTCAAACGGGAAAAAATGAAAGAAGAAATGATAGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGTTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 813 0.4403 MVLIEQEKTDDPNANPSNATAGNDASDGFETASEADLDSDGDDGGASSREELQHSDQPQQTPKRTEGEQEQDVHQQSISSEEALINEDELRQKALDEANEAKVEGNKLFVDGKYEEALSQYDHALQVALDVPSFVEIRSICYANRAVCFLKQGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi549g00001 270 MobiDBLite consensus disorder prediction 1 85 - -
Vivi549g00001 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Vivi549g00001 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Vivi549g00001 270 MobiDBLite consensus disorder prediction 10 27 - -
Vivi549g00001 270 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Vivi549g00001 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 3 269 - -
Vivi549g00001 270 Pfam Tetratricopeptide repeat 141 171 IPR001440 GO:0005515
Vivi549g00001 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Vivi549g00001 270 SMART tpr_5 173 206 IPR019734 GO:0005515
Vivi549g00001 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Vivi549g00001 270 SUPERFAMILY TPR-like 94 215 IPR011990 GO:0005515
Vivi549g00001 270 Gene3D Tetratricopeptide repeat domain 58 238 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi549g00001 95 229 Calmodulin-binding Proteins AT3G25230 37.762 4.14e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi549g00001 K24926 - gmx:100808386 376.326