Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi547g00038 ATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCCATTTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTTTCAACAAGAGGGAGACTCTATGAATTTGCAAGTTCAAGCATTCTAGAAACAATAGAACGATACCGCGGTCATAACCGGATTAATAATGCTCCAACAACATCTGATTCTGTTGAAAATACTCAGCATTTGATGGAAGAAGCAGAAAACATGATGAAAAGGATTGATCTTCTTGAGACTTCAAAACGGAGACTCTTAGGAGAAGATTTGGGGTCTTGTTCAATTAATGAACTACAAAAGATAGAGCAACAGTTGGAGAAGAGTATAACCAAAATTCGAGCAAAAAAGACTCAAGTCTACAAGGAACAAATAGATCAGCTAAAAGAAAAGGAAAAAGTCCTAGCTGATGAAAATTTCATGCTCTCTCAGAAGTATGATAGTTATTCATCACAGCATGCAAAAAAAGATGGCAGAGAAAATATAGCTGAGGCTGAACCTTTTGCAGATCAAAGTAGTCCAAGTTCAGATGTTGAAACCGAATTATTCATCGGTCTTCCAGAATCAAGAACTAGGCGGATTTCACCAAATTTGAGGACTAATTAA 684 0.367 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALIVFSTRGRLYEFASSSILETIERYRGHNRINNAPTTSDSVENTQHLMEEAENMMKRIDLLETSKRRLLGEDLGSCSINELQKIEQQLEKSITKIRAKKTQVYKEQIDQLKEKEKVLADENFMLSQKYDSYSSQHAKKDGRENIAEAEPFADQSSPSSDVETELFIGLPESRTRRISPNLRTN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi547g00038 227 Coils Coil 85 105 - -
Vivi547g00038 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vivi547g00038 227 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Vivi547g00038 227 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Vivi547g00038 227 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi547g00038 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Vivi547g00038 227 MobiDBLite consensus disorder prediction 173 227 - -
Vivi547g00038 227 MobiDBLite consensus disorder prediction 176 190 - -
Vivi547g00038 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 Coils Coil 122 164 - -
Vivi547g00038 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi547g00038 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi547g00038 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi547g00038 1 159 MADS-box Gene Family AT2G45660 70.186 2.69e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi547g00038 K-box 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi547g00038 - - vvo:131620066 311.612