Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi547g00029 ATGGGGAGACGGAAGACAGAAATGAAGCGTATAGAGAATGCAACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGAAGAAGAAAGCTTTTGAGTTATCAATTTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTTTCAACAAGAGGAAAACTTTATGAATTTGCAAGTTCAAGCATTTTAGACACAATTGAACGATACCGCAGTCATAGCAGAATTAATAATACTCAAACAACATCTGAATCAGTTGAAAATACTCAGAATTTGAAGGAAGAAGCAGAAAGCATGAGGAAAAGGATTGATCTTCTTGAGACTTCAAAACGAAATTTTTTAGGAGAAGGTTTAGGGACTTGTTCCATTGATGAACTACAAAGGATAGAGCAACAGTTGGAGAGGAGTATAACCAAAGTTAGAGCAAAAAAGATTCAGGTTTACAGGGAACAAATTGTTCAGCTAAAAGAAAAGGAAAAAACCCTAGTTGCTGAAAATATCAGGCTCTGTGAGAAGGTGAATTCATCACAGCAATTAAGAAAACCTTATGCAGATGATAGTAGTCCAAGTTCAGATGTGGAGACTGAGTTGTTCATTGGACTTCCAGAAACAAGAACAAGGCTAGTTTCAACAAAGTTGAGGAATAGTTAA 648 0.3565 MGRRKTEMKRIENATSRQVTFSKRRNGLKKKAFELSILCDAEVALIVFSTRGKLYEFASSSILDTIERYRSHSRINNTQTTSESVENTQNLKEEAESMRKRIDLLETSKRNFLGEGLGTCSIDELQRIEQQLERSITKVRAKKIQVYREQIVQLKEKEKTLVAENIRLCEKVNSSQQLRKPYADDSSPSSDVETELFIGLPETRTRLVSTKLRNS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi547g00029 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Vivi547g00029 215 Coils Coil 88 108 - -
Vivi547g00029 215 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vivi547g00029 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Vivi547g00029 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi547g00029 215 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vivi547g00029 215 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi547g00029 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 Coils Coil 122 164 - -
Vivi547g00029 215 FunFam Agamous-like MADS-box protein AGL13 13 80 - -
Vivi547g00029 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi547g00029 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi547g00029 1 159 MADS-box Gene Family AT2G45660 66.667 5.71e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi547g00029 K-box 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi547g00029 - - cave:132186361 266.929