Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi547g00012 ATGGCTGAAGAAGATTCAAGAAACATTGATCTCACTCTCGGAGAACCCAAAGAGGAACCCGAAACCGAAGATGGGTCGGCGATAAAGGCCATACCGAAGGCTATTCCGGTGCAGGCGGGGTTACCTATGTCCATGCACGTGAACAAGACGTTATTCCAAGCTCAAACTCAGGCTCAATACCAAACCCAGGCCCAGGCTCAAGCCCAAGCCCAACTACCTGTTCAAAAAAGAGCCTCCACTAAAGACCGTCACACCAAAGTAGAAGGTCGTGGCCGGAGGATTCGAATGCCTGCCACGTGTGCGGCTAGGATCTTCCAACTCACCAGAGAACTCGGACATAAATCAGACGGCGAAACAATCCGGTGGCTTCTCGAGCACGCTGAGCCCGCCATCATTGCCGCCACCGGAACCGGCACCGTCCCCGCCATAGCCATGTCCGTCAACGGAACTCTCAAAATCCCAACCACTTCCCCCAACAAAAACTCCGACCAGGAACAACAACAACAACAATCCGATGATTCACCAGAAAAAAAGAAACGTAAACGACCAGCGAACAGTGCTTACGTGGACATAAACGAGAGCGCCGTTTCAGTTTCCGCAGGTTTAATAACAACCTCCAACGTAAACACAAACATGAACATGAACAATAACACCGCGATAATTTCGCAACAAACTGCAATTCCGTTACCGCAAAACATGGTCCCGGTGTGGGCCATACCATCAAACGCCGTCGTTCCAACCGGAAACGCGTTCTTTGTGGTCCCAGCAAATCAGCCTCAGTTTTTCACCTTAGCTAGACCAATCTCCGGTTTCGTTTCTTCCATGGTAACACCCGTAGTCCAACTCCAACAAGCCTCCACTTTATCCATCCCATGTTCAACTTCCCCGTCATCAAAATCCCCGGCGAGATCCACCGTCATAGCACCGAGCACCGCCGCAACAACCACCCCTCAAACGCTGAGAGACTTTTCATTGGAGATATTCGATAGACAAGAGCTTCAGTTATTGTCGCGTTCTTCTTCCAAGCATTGA 1032 0.5048 MAEEDSRNIDLTLGEPKEEPETEDGSAIKAIPKAIPVQAGLPMSMHVNKTLFQAQTQAQYQTQAQAQAQAQLPVQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPNKNSDQEQQQQQSDDSPEKKKRKRPANSAYVDINESAVSVSAGLITTSNVNTNMNMNNNTAIISQQTAIPLPQNMVPVWAIPSNAVVPTGNAFFVVPANQPQFFTLARPISGFVSSMVTPVVQLQQASTLSIPCSTSPSSKSPARSTVIAPSTAATTTPQTLRDFSLEIFDRQELQLLSRSSSKH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi547g00012 343 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Vivi547g00012 343 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 59 334 IPR005333 GO:0003700
Vivi547g00012 343 MobiDBLite consensus disorder prediction 151 169 - -
Vivi547g00012 343 MobiDBLite consensus disorder prediction 170 186 - -
Vivi547g00012 343 MobiDBLite consensus disorder prediction 291 313 - -
Vivi547g00012 343 Pfam TCP family transcription factor 79 184 IPR017887 -
Vivi547g00012 343 MobiDBLite consensus disorder prediction 151 186 - -
Vivi547g00012 343 MobiDBLite consensus disorder prediction 1 25 - -
Vivi547g00012 343 MobiDBLite consensus disorder prediction 70 90 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi547g00012 73 342 TCP Transcription Factor Family AT2G45680 52.941 1.80e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi547g00012 TCP 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi547g00012 - - vvo:131633117 568.155