Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi547g00003 ATGGATATGAAAGTGAAAAGGTTCAACAGAACTGAACGAGTCATTGGGACAACATGCATCTATTGGCTCCAAGGAAGATGCAACAGAAACCCGTGTAGGTTTCTTCACAGTGAAACACCGTCGATTAGGACTACTGCTTCTTATAGAGATGATACTGCATCATACCATAATGCAAGGAAGCGTTGTAGTGTATCGTCTGAATCTGCTAAGAGGGTCTTATGTAGAAAGACTGAAAATGACACGTCGGTTCCCAAACATACTACTAAGAAGGTCTTGAGTAGAAATTTGGAAGATGACAGAGAAAGGACACAAGTTCTTCCTCAGAACCCTTCAACAAGCATCTGCAAATATTGGATGAATGACAACTGTGTTCATGGTGATAAGTGCCGGAATTTACATTCATGGTCTTATGGCGATGGGTTTTCCATATTAGCAAAGCTTCAAGGACACAAGAAGCTTGCCACCGGAATTGCACTTCCAAATGGATCAGACAAACTTTATTCTGGCAGCGCCGACGGGACACTTCGGTCATGGGACTGCCATACCGGTCAATGTGCCAATCTGATGAATCTTGGTGCCGAAGCTACCTCTTTGATTAATGAAGGCCCATGGATTTTTGTCGGTCTTCCTAACATTGTCAAGGCATGGAATATTCAGACTGCTTCGCAGTTTACTCTTGATGGACCTAAGGGACGAGTACTTGCCATGACTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAAAGGCAGCTCGAAACCCAATTCTCCTTTTGAATTGGTTGCATCCCTATGCGGTCACACTAAATCTGTTGTTTGCCTGACTGCTGGGGCTCACAACAAGATGCTGTACTCAGGATCCAAGGATCAAAGCATTAAGGTTTGGGACCTAGACACATTTGAGTGTAAAATGACACTCAATGCACATGCAGATGAAGTCACATCCCTTCTTTGTTGGGACAATTTCTTGTTATCCGGTTCATCAGACCGCACTATCAAGGTCTGGTATAAAACCATGGAGGAAACTTTGGAAGTTGCATATTCACACGATGTAGAAAATGGTGTTGTTGCACTTTCTGGAATGACAGATCCAAAAGATAAGCCTATAGTGTTCTGCTCTACTAGAGACAACTCAGTTCGCCTCTATGAACTGCCATCGTTTGTGGAGAGGGGTAGATTGTTTGCTAAGCAAGAAGTTGGATTAATCGATGTAGCTCCTGGTGGACTCTTCTTCACCGGAGACAGAACTGGAATGCTGACTGTCTGGAAATGGTTAGAAGAGCCCAAGGTTGCAGCATCCTCTTGA 1326 0.4389 MDMKVKRFNRTERVIGTTCIYWLQGRCNRNPCRFLHSETPSIRTTASYRDDTASYHNARKRCSVSSESAKRVLCRKTENDTSVPKHTTKKVLSRNLEDDRERTQVLPQNPSTSICKYWMNDNCVHGDKCRNLHSWSYGDGFSILAKLQGHKKLATGIALPNGSDKLYSGSADGTLRSWDCHTGQCANLMNLGAEATSLINEGPWIFVGLPNIVKAWNIQTASQFTLDGPKGRVLAMTVGNDTLLAGAEDGVISAWKGSSKPNSPFELVASLCGHTKSVVCLTAGAHNKMLYSGSKDQSIKVWDLDTFECKMTLNAHADEVTSLLCWDNFLLSGSSDRTIKVWYKTMEETLEVAYSHDVENGVVALSGMTDPKDKPIVFCSTRDNSVRLYELPSFVERGRLFAKQEVGLIDVAPGGLFFTGDRTGMLTVWKWLEEPKVAASS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi547g00003 441 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 342 IPR001680 GO:0005515
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 306 - -
Vivi547g00003 441 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Vivi547g00003 441 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Vivi547g00003 441 Pfam WD domain, G-beta repeat 144 179 IPR001680 GO:0005515
Vivi547g00003 441 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Vivi547g00003 441 Pfam WD domain, G-beta repeat 266 303 IPR001680 GO:0005515
Vivi547g00003 441 SMART WD40_4 219 256 IPR001680 GO:0005515
Vivi547g00003 441 SMART WD40_4 140 179 IPR001680 GO:0005515
Vivi547g00003 441 SMART WD40_4 264 303 IPR001680 GO:0005515
Vivi547g00003 441 SMART WD40_4 306 343 IPR001680 GO:0005515
Vivi547g00003 441 SMART WD40_4 393 430 IPR001680 GO:0005515
Vivi547g00003 441 ProSiteProfiles Zinc finger C3H1-type profile. 109 136 IPR000571 GO:0046872
Vivi547g00003 441 Gene3D - 16 137 - -
Vivi547g00003 441 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Vivi547g00003 441 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Vivi547g00003 441 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Vivi547g00003 441 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Vivi547g00003 441 PANTHER - 25 440 IPR044715 -
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 342 - -
Vivi547g00003 441 SUPERFAMILY WD40 repeat-like 110 430 IPR036322 GO:0005515
Vivi547g00003 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 179 - -
Vivi547g00003 441 Gene3D - 141 430 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi547g00003 243 342 Miscellaneous Gene Families AT5G08390 30.392 4.32e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi547g00003 WD40 4.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi547g00003 - - mtr:25500966 566.229