Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi546g00020 ATGGACCTTCTAAGATTAGAACCATGTTCATCTCATAATTTGAATCTCTCATTTTCTGACAAGAGAAATGAAGAGAAAAAACATCATCTAGTTCTTGATTTAAGTCTTCCTAGCAAAGAACATTCGGGCGATAACGAGTCGTCGAAGCAAGAACTCAATCTCATAAACTGTTTTGATACAGACGCGTCGAATTCGATGAACTCGTCCACAGAATCTAATCATGGTAATGAAATAGAGCCAAGGATTTTCTCATGCAACTACTGTCAAAGAAAGTTTTATAGCTCACAGGCACTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACTATGGCGAAAAGAGGTTACAAAACTTCGGTTTCGCTGGATTTTGAACACAGGTACTCAAGTTTGGCTTCTCTACCTTTGCATGGCTCATATAACAGATCATCATCAGCATCCTCCTCACCGTCACTCGGAATTCAGGTGCATTCTTCTATGATTCATAAACCTTCTTATCAAGCACCGTTTTTCGGTTTGTCTCGTCCTCGTGTTCAAAGCCAGTGGCAGAAACTACCTGTGTATTCACAACCAGCAACTGGAAATCTTGCATCAGAAACTGATGGATCATCCTTTTCTCAAAGAAAGGTTCAAGATGGATTTGGAGGATACTGGTTTGGTAACAGTGCTACTGCTACTGATACACGTTTGAAGACTAAACAAGATGAGTTGCAGAAGCTTGATTTGTCCCTCAAACTCTAA 741 0.4008 MDLLRLEPCSSHNLNLSFSDKRNEEKKHHLVLDLSLPSKEHSGDNESSKQELNLINCFDTDASNSMNSSTESNHGNEIEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGYKTSVSLDFEHRYSSLASLPLHGSYNRSSSASSSPSLGIQVHSSMIHKPSYQAPFFGLSRPRVQSQWQKLPVYSQPATGNLASETDGSSFSQRKVQDGFGGYWFGNSATATDTRLKTKQDELQKLDLSLKL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi546g00020 246 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Vivi546g00020 246 Gene3D Classic Zinc Finger 59 133 - -
Vivi546g00020 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 246 IPR044246 GO:0009788
Vivi546g00020 246 SUPERFAMILY beta-beta-alpha zinc fingers 80 111 IPR036236 -
Vivi546g00020 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Vivi546g00020 246 FunFam Zinc finger protein 2 59 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi546g00020 20 246 C2H2 Transcription Factor Family AT5G10970 38.776 3.59e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi546g00020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi546g00020 - - gmx:100812573 236.884