Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi546g00009 ATGATATCTCAATATCGTCCAGATTTTCGTGTAATAATGATGGAGAGTAAACTTCTTAGACTTCCAAAGATATATGTGAAAAAATATTGGAAAGGAACCTCAAATCCCATATTTTTTAGGCTTCCAAATGGTGTTCAACACAAAATATTCTGGGAAGAACGTGATGGTGATGTTTGGTTTCAAAAAAATTGGAAAGATTTTGCAAAGTGTTTAAAATATGGAGATATCTTAACTTTTAAACATACTGGTGGAGCATATTTCAAAGTAAAGATATTTGGTAGAAATTCTTTAGAAATAAATTATTCAAATATCAAATGTTTAGATGAAGTTGTTGATTTAAGTGATGATGAGAGTGAAGAACGCACACAAACTCAAAAGAGAAAAAATGGCAAAAGAAAAGTTGCAGATTTGAATCCAAGTAGAAACAAAGGTGTGATTAAGAAGGCCAAGAAATGTTCAAACATAGGAAATATTGATGATGGGAGAGTTAATAAGGAGATTCCATATTTTGAAGTCACATTGACACCAACTTATGTCAATTATTATAGTATGAGGATACCAAATGTGTTTTCAAGAAAATATTTGAAAGAGACGGAAGAAATTGCAATCTTGAAAGTTGGGGAGGACATGACTATGGAAGTGGGGTTCAGGTTTGATGCTAATGCCAAAGGAATGGTTTTTCAAAATGGTTGGAAGAATTTTTCACAAAAATATAATTTACAAATTGGTGATATTTGTAAATTTGTGATGACACAATCCAAACCACTTTTATTTTCCATTGCTATTACTCGAGCCAAAATGGAATCAAAACCTAAGAAGTTCCAAGGTGTCTCTTCGGGTGATGATACAATTCCAAAAAGAAAAAGCATTGGAGAAAGTTCTAGAGGTAGAGGTCGCCCAAAAAAACATGTTTCCAAAGATATGGTGTGA 930 0.3237 MISQYRPDFRVIMMESKLLRLPKIYVKKYWKGTSNPIFFRLPNGVQHKIFWEERDGDVWFQKNWKDFAKCLKYGDILTFKHTGGAYFKVKIFGRNSLEINYSNIKCLDEVVDLSDDESEERTQTQKRKNGKRKVADLNPSRNKGVIKKAKKCSNIGNIDDGRVNKEIPYFEVTLTPTYVNYYSMRIPNVFSRKYLKETEEIAILKVGEDMTMEVGFRFDANAKGMVFQNGWKNFSQKYNLQIGDICKFVMTQSKPLLFSIAITRAKMESKPKKFQGVSSGDDTIPKRKSIGESSRGRGRPKKHVSKDMV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi546g00009 309 Gene3D - 144 267 IPR015300 -
Vivi546g00009 309 MobiDBLite consensus disorder prediction 285 309 - -
Vivi546g00009 309 SUPERFAMILY DNA-binding pseudobarrel domain 164 262 IPR015300 -
Vivi546g00009 309 MobiDBLite consensus disorder prediction 269 309 - -
Vivi546g00009 309 SMART B3_2 170 266 IPR003340 GO:0003677
Vivi546g00009 309 SMART B3_2 9 95 IPR003340 GO:0003677
Vivi546g00009 309 Pfam B3 DNA binding domain 170 254 IPR003340 GO:0003677
Vivi546g00009 309 SUPERFAMILY DNA-binding pseudobarrel domain 5 95 IPR015300 -
Vivi546g00009 309 ProSiteProfiles B3 DNA-binding domain profile. 169 266 IPR003340 GO:0003677
Vivi546g00009 309 PANTHER B3 DOMAIN-CONTAINING 4 133 - -
Vivi546g00009 309 CDD B3_DNA 168 254 IPR003340 GO:0003677
Vivi546g00009 309 CDD B3_DNA 7 92 IPR003340 GO:0003677
Vivi546g00009 309 Gene3D - 1 96 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi546g00009 6 119 B3 DNA Binding Superfamily AT3G18990 27.692 5.32e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi546g00009 B3 6.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi546g00009 - - vvo:131633070 621.313