Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi546g00001 ATGTACATTTCAGAGTTCCCTGAGTTTTACTCTGCTAGGGAGCTTTTTGAGCTTTTCGGTTGTTCTGGCCAAGTGGTGGAGGTAGCTATTTCTCCCAGAAGAAACAAGTTCGGTAAGCGATTTGGTTTCGCTAGATTCATCGATGTAGAAGATGCTCGAACGTTAGCGGTTCGTCTGGACAATATAATTATTGATGGCAGTAAAATTCATGTATACTTGCCGAGGTTTACGAGAGTTGCTTTCGGTTCAGGAGGTAGGCGTGAGTTTGTGGAGAAGGCGAAGCATCCTCAACCACAAATTAGGCCACAGAGAGCGGAAGTGGGGAAGAGTAGGGGCAATTGGCAAGCTGGTCCTATCAGTAATAATCCACTTTCCTATGCTGAGGCTGTGGCTTCTGAGAATTCTGGTTTTGTATCAAAAGTGAATGAGCAGGTCCTTTTCGATTTCAATTCTGATTATGTTCTTAGAGGTAGGATGGAGAAGGCTTATGTGGGTAAGTTTTGTATTCCGGGGTCTGCGTACACAATTCAAACTCACATGGAATTGGACGGGGTTTACGCGATTAAAGTAACTCCATTAGGCGGTAATTGTTGTTTGCTCGAAGAAAGGGAAGAAGGGTTCATTGAAGACTTGACTGGTGAAGGCGAGACTTGGTGGAAGTCTTGGTTTTCCGAAGTCAAGAAGTGGGAGGCGGATACGATAGACAAAGGTAGGGACGCGTGGTTTCGAATTTATGGTACTCCAGCTCATGTGTGGAGTTTTGAGTTTTTCGTAGCTTTGGCCAAAAATTGGGGGAGTTTCATCTGTTGGGATGAGCACACTGCTAGTGGCGAGGCTTTTGTTGTGGCTAGAGTTATGGTGAATATCCCTGTATCTTTATCGATTCCTGACTCTGTTTCGGTTAATATAGACGGAAGGAGGGTGGTTCTTTTTGTTAGGGAAGATGCGGCGGGTTTGTTTCGATCGTCGAATCGAAATCAGTTGCATAATTCTTCAGTTAGCGTGAGTTCTGACACTACAAAAAATGCTCCATTTGCGGAGGTTTTTTTTGCAATTTGA 1059 0.4429 MYISEFPEFYSARELFELFGCSGQVVEVAISPRRNKFGKRFGFARFIDVEDARTLAVRLDNIIIDGSKIHVYLPRFTRVAFGSGGRREFVEKAKHPQPQIRPQRAEVGKSRGNWQAGPISNNPLSYAEAVASENSGFVSKVNEQVLFDFNSDYVLRGRMEKAYVGKFCIPGSAYTIQTHMELDGVYAIKVTPLGGNCCLLEEREEGFIEDLTGEGETWWKSWFSEVKKWEADTIDKGRDAWFRIYGTPAHVWSFEFFVALAKNWGSFICWDEHTASGEAFVVARVMVNIPVSLSIPDSVSVNIDGRRVVLFVREDAAGLFRSSNRNQLHNSSVSVSSDTTKNAPFAEVFFAI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi546g00001 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
Vivi546g00001 352 Pfam Domain of unknown function (DUF4283) 187 287 IPR025558 -
Vivi546g00001 352 CDD RRM_SF 2 71 - -
Vivi546g00001 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 70 IPR000504 GO:0003723
Vivi546g00001 352 PANTHER DUF4283 DOMAIN PROTEIN 166 314 - -
Vivi546g00001 352 SUPERFAMILY RNA-binding domain, RBD 2 79 IPR035979 GO:0003676
Vivi546g00001 352 Gene3D - 1 80 IPR012677 -
Vivi546g00001 352 SMART rrm1_1 1 72 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi546g00001 1 115 Eukaryotic Initiation Factors Gene Family AT3G16380 26.446 2.02e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi546g00001 - - vvo:131651443 706.057