Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi545g00020 ATGTTTCCAACCATTTTTGCTTTCTTCTCTGTCTTCCTATCTCTGACTTCTCACTCTTTTGCTGCCGACACCACTTCTTGGGTGAAAGCTGGTTATTACTATTCCGGCAATGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACTCACATCTTATGTGCTTTTGCTTTTATCAACTCCACAAACTATAACATCTTTATAAACTCTTCTGAACAACACAAGTTCTCTACCTTCACCAACACAGTAAAGCTCCAAAACCCATCTCTTATAACTCTTCTATCAATCTATGGTGGAAGAGAAAGCCCTTCAGTTTTCGACTCAATGATAAACCAGTCTTCTTACAGAAAATCTTTCATTGATTCTTCCATCAAAACAGCAAGAAAATATGAGTTTCAAGGCATAGATCTTAGTGGAGTCTCACCAAAGCAAGGTCAAGAGCTTGCAAATTTAGCAACCCTTTTGAAAGAGTGGCGAATCGCGGTAACTTCTGAGGCAAGAAACACTAGAAAGACAGAATTAGGGTTGGTGATGGCAGGTTATTATCTCAAAGCTTCAGATTCATTTAGTTATCCCTTTGAATCAATGCAGAAGAATCTGGATTGGGTTCATTTTGTTGCTTATGATTACTATCTTCCTAAAAAGGATAGTGTCACAGGTTTTCATGCAGCTTTATATGGTTCATCTGGTTGGGAAAATACTGATTCTGGTATCAAAGAGTGGAGAAAGAGAGGATTTTCTTCTAACAAGCTTGTAATTGGTTTACCTTATCATGGATATGCATGGAAACTTGTGAAACAAGGTGAAGATGGTGCTGGAAAACAAGCTTCTGGTCCTGCAATAACCATGGATGGTTCTATGGCTTATAAGTTGATAAAAAGTTACATTAGAAGCTTTGGAGAAGGAGTAGTTTTAAGTTATAATAATACTTTTGTGGTGAATTATTTCACTGTTGCTTCCACTACTTGGGTTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTATCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAACTGGGTCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGATCATCATAACGGAAGGTTGCTGATAATTGTTCTGCTTACTACTTTGACTGCTGCAGTTCTCTTGGGAACAGTATTTTGCTACTACTACCAAGGAACAGTGGCGATTCTTACAAGAATGATATACAAACTTAGGATATGTTTTTCAGAAGCTGAAGAAGATCTTAATGGAAATGCTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAAAAGAAAATAAGCTTGGACAAGGTGGATTTGGTGCAGTGTATAAGGGAAAATTACGAAAGGGACAAGAAATAGCTGTCAAAAGACTCTCAGAAAACTCGAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAGCATGTGAATTTAGTTAGACTTTTGGGTTATTGCACAAAAAGGAATGAGAAGCTTCTCATCTATGAATACCTCCCAAACAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCGGTTCTTCTAGATTGGAAGAAACGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTGTTTATCTTCAAGAGTACTCGAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATCCTAAGATATCCGATTTTGGCATGGCTAGAATTTTCGAGAAGTATGAACATGAAGCAAACACAAGCAGGATTGTGGGAACATATGGGTATGTACCTCCCGAGTATGTCAAAAAAGGCATATACTCACTCAAATATGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATCAGTGGAAAGAGGACTTCACAATATTACGGACCACATGAAAATATGAACCTTTTGGAATATGCATACGAGCTATGGATGGAAGGAAGAGGTGTGGAGTTCTTGGACCCTTCATTGGATGATTCAACATCTCATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGCTAGAAGTTGATTTACTGCTCAAGAATGAGGGAACACCCGTTGGTACTCCTAACATGCCCGCTTTTTCGATCAAAAAACACGAAGATGACAAGGGAGATTCATCTACGTCAAGGTTGAAATTTTCTTCAATCAACGATGTTACAATTTCTGAGATGGTAGCAAGATAA 2298 0.3716 MFPTIFAFFSVFLSLTSHSFAADTTSWVKAGYYYSGNEISASEIKSTLFTHILCAFAFINSTNYNIFINSSEQHKFSTFTNTVKLQNPSLITLLSIYGGRESPSVFDSMINQSSYRKSFIDSSIKTARKYEFQGIDLSGVSPKQGQELANLATLLKEWRIAVTSEARNTRKTELGLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYYLPKKDSVTGFHAALYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGYAWKLVKQGEDGAGKQASGPAITMDGSMAYKLIKSYIRSFGEGVVLSYNNTFVVNYFTVASTTWVNFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAQEVDEDHHNGRLLIIVLLTTLTAAVLLGTVFCYYYQGTVAILTRMIYKLRICFSEAEEDLNGNASDLIVFGYLTIKVATDNFSKENKLGQGGFGAVYKGKLRKGQEIAVKRLSENSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRNEKLLIYEYLPNKSLDHFLFDPRKSVLLDWKKRVNIIEGITQGLVYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFEKYEHEANTSRIVGTYGYVPPEYVKKGIYSLKYDVYSFGVLLLQIISGKRTSQYYGPHENMNLLEYAYELWMEGRGVEFLDPSLDDSTSHCKIMRCMQVALLCVQENSADRPSMLEVDLLLKNEGTPVGTPNMPAFSIKKHEDDKGDSSTSRLKFSSINDVTISEMVAR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi545g00020 765 MobiDBLite consensus disorder prediction 727 747 - -
Vivi545g00020 765 Gene3D Glycosidases 42 357 - -
Vivi545g00020 765 FunFam Uncharacterized protein 421 521 - -
Vivi545g00020 765 SMART 2g34 27 355 IPR011583 GO:0008061
Vivi545g00020 765 CDD GH18_plant_chitinase_class_V 25 361 - -
Vivi545g00020 765 FunFam Uncharacterized protein 522 727 - -
Vivi545g00020 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 87 761 - -
Vivi545g00020 765 Pfam Protein tyrosine and serine/threonine kinase 448 712 IPR001245 GO:0004672|GO:0006468
Vivi545g00020 765 ProSiteProfiles Protein kinase domain profile. 446 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi545g00020 765 Gene3D Phosphorylase Kinase; domain 1 420 521 - -
Vivi545g00020 765 SUPERFAMILY Protein kinase-like (PK-like) 430 724 IPR011009 -
Vivi545g00020 765 Pfam Glycosyl hydrolases family 18 32 355 IPR001223 GO:0005975
Vivi545g00020 765 CDD STKc_IRAK 452 713 - -
Vivi545g00020 765 SMART serkin_6 446 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi545g00020 765 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 371 IPR001223 GO:0005975
Vivi545g00020 765 SUPERFAMILY (Trans)glycosidases 30 356 IPR017853 -
Vivi545g00020 765 Gene3D Transferase(Phosphotransferase) domain 1 522 722 - -
Vivi545g00020 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vivi545g00020 765 Gene3D - 257 326 IPR029070 -
Vivi545g00020 765 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi545g00020 434 765 Receptor kinase-like Gene Family AT4G11530 51.929 1.95e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi545g00020 Glyco_hydro_18 1.8e-52 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi545g00020 - - tpra:123922687 1295.8