Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi545g00019 ATGGCTGCTGCTCTTCTCTTGGGAACAATATTTTGTTACTACTACTACCACTACTACCAAAGAACCATAACCATTATTACAAAAATGATATACAAGTTGAAGATATATTTATCCTCGGCTGAAGAAGATGTTGATGAAGATTCTTATGACTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAAATAACTTCTCAAAAGAAAATAAGCTTGGAGAAGGTGGATTTGGTACAGTGTACAAGGGAAAATTACGCAAAGGACATGAAATAGCTGTCAAAAGACTCTCAAAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATTACGCTCACCGCAAGACTACAACATGTAAATTTAGTTAGACTTTTTGGTTACTGCACAAAAAGGAATGAGAAGCTTCTTGTCTATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAAGTTTTCTAGATTGGAAGAAACGCGTGAATATCATTGAAGGGATTACTCAAGGCCTTCTGTATCTCCAAGAGTACTCAAATTTTACTATAATCCATCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATCAGATGAATCCTAAGATATCTGATTTTGGACTAGCTAGAATTTTTGAAAAGAATGAACTTGAAGCAAATACAAGTAGGATTGTGGGAACATATGGGTGTGTACCTCCCGAGTATGTCAGAAAAGGCATATACTCACCCAAGTATGAAGTTTATAGTTTTGGAGTCCTTCTTTTGCAAATCATAAGTGGGAAGAGATCTTCACATTATTACAGCCCAGATGAAAATATGAATCTTTTAGAATATGCATATGAGCTATGGATGGATGGAAGGGGTGTGGATTTTTTGGACCCTTCATTGGATGATTCAACATCTCATTGTAAAATCATGAGATGCATGCAGGTGGGTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGCTAGAAGTTGATACACTGCTCAAGAATGAAGGTACACCTGTTGGTACTCCCAACATGCCCGCTTTTTCGATGAAAAAACACGAAGATGACAAGGGAGATTCATCTACGTCAAGGTTGAAATTTTCTTCAATCAATGATGTTACAATTTCTCAGATGGTACCAAGATAA 1158 0.3618 MAAALLLGTIFCYYYYHYYQRTITIITKMIYKLKIYLSSAEEDVDEDSYDLIVFGYLTIKVATNNFSKENKLGEGGFGTVYKGKLRKGHEIAVKRLSKTSNQGLEEFKNEITLTARLQHVNLVRLFGYCTKRNEKLLVYEYLPNKSLDHFLFDPRKSSFLDWKKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHQMNPKISDFGLARIFEKNELEANTSRIVGTYGCVPPEYVRKGIYSPKYEVYSFGVLLLQIISGKRSSHYYSPDENMNLLEYAYELWMDGRGVDFLDPSLDDSTSHCKIMRCMQVGLLCVQENSADRPSMLEVDTLLKNEGTPVGTPNMPAFSMKKHEDDKGDSSTSRLKFSSINDVTISQMVPR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi545g00019 385 Gene3D Phosphorylase Kinase; domain 1 40 141 - -
Vivi545g00019 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vivi545g00019 385 SUPERFAMILY Protein kinase-like (PK-like) 49 353 IPR011009 -
Vivi545g00019 385 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Vivi545g00019 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 381 - -
Vivi545g00019 385 Pfam Protein kinase domain 66 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi545g00019 385 ProSiteProfiles Protein kinase domain profile. 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi545g00019 385 FunFam Uncharacterized protein 142 347 - -
Vivi545g00019 385 Gene3D Transferase(Phosphotransferase) domain 1 142 343 - -
Vivi545g00019 385 MobiDBLite consensus disorder prediction 339 368 - -
Vivi545g00019 385 CDD STKc_IRAK 72 339 - -
Vivi545g00019 385 SMART serkin_6 66 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi545g00019 385 FunFam Uncharacterized protein 41 141 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi545g00019 54 385 Receptor kinase-like Gene Family AT4G11530 51.335 5.05e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi545g00019 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi545g00019 - - psat:127073424 654.825