Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi545g00004 ATGTGGTCTTCTGTCTCAAGAGTCTTGGCATTTGGGGAGCGTTGCAGTCGTATTCTTTTGAGCGGTGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCAGAAGGAATTTCAAGTGACGAGTCTGTATGTGATAAATATCTTGCAAAGACAGCTGAACTACTTACTTCCAAATGCATGACAGGTGACAATGTTTCTGATCCATCTTCCTTGGAAATATTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGTCAATGGAAAAATGATTTTCTTGTAGGAGTCCATGCGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAAAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGGCTTGATATTCAGACATGTTGCCTTGTAATACGGTTTGATCTACCCGAAACCGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCCCGTATGCCTCGTTCAGAATATGCATTTTTGGTCGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATACGGAAATTGCTGTCCGAACATCCATTGAGACACACAACATCCCCGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTGCGGGATACAGTATCTCGTTGCTACACCAGTATTGTTCAAAGCTTCCGCATGATGAGTACTTTGATCCCAAGCCAAGTTTCTTTTACTTCGATGATTCAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTGCACCATATTTGTCTATGGAGGCTTCGAAAAGAGACGCATGTCTGAAAGCAATTGAAGAACTGTATAAATTAGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGATGCAGAGCCAGAGGTTTTGGACTCTTCTGATTCAGATGACTGTGAAGATAATATTTCAAGAGGAGAACTGTATGAGATGCTAGTTCCTTCTGCCTTTAGACAGTCATGGAAAAATACGGAGAAAACTGTCCGTCTCAACTCTTACTACATTAAATTTTGCCCCACTCCGGAGGATAGGGTCTATAAAAAATTTGGCTTGTTCATCATGACTCGTCTTCCACTGGAGGCAGAGAAACTGGAACTTGATCTTCATCTAGCTCACAGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAATGATGAGATAAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATCAGAATTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCTCACACGCGCACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATAATGATGTGATGAAAGTAGATTGGAAGACAGTAAAGAGATGCCTTTGTTCACCAATCTTCAGGCATCCAGATGATACATTCGATAAAAAGGTTACCCCTTTTGATAATCATCTGCATCTTGCCAATGGTTACAGAAGTGTTGGAGATGTTGAGAATAGTTTAGTGTATACTCCACACACGAATAACTTCTTTTTTGTCACAAATGTTATTTATGAAAAGAATGGATTCAGCCCTTTCAAAGATTCAGACACTTCAAGCTACGTGGACCACTTACATGAAAAGTTTTCCATTACTCTCAAACACCCCGAACAACCACTTCTACATGCAAAACCACTCTTCAAATTCCACAACCTGCTACACAATCGAAAGCATGGCGATGCGGAACCACATGAGCTAGAGGAATACTTTGTCTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTTGGCTTTTCCAAGGATATTGGTAGTTCAATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCACCTACATTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAAAAGTGTCAGGAGCGTCTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGGACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTAAATAACTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGCCATCCTTGTCCAAGAGTTTGTACCGAGGAAACTGAAGACAGCATACACTTATGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAAGTGGACTCCGATGTGATAAAAATCACCATTGGTTGCATAGGAAAACAATTGCTGATGCGGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCATTTGCCTTTCTTACATGGATTGGCATACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCACCGGAAGTGTTGACTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAAGTAAGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCTTTTGTACATCCTTCCTATAATAAGCATGGAGGAGGTTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTGTTGGATTATTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACGGATCTGAGAGCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTTGATCGCTGTTTTGATGAATTTCTTTTATGTGATTCAAATGCTCTGACCCAGGCAATAAAAAAGTACGCTGACTGTATTAGAAGACCTATACCGGACTGTGGCAATAATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCTTGTATTGGTGCTGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAGTTGCAGCTTCTGCCATCAAAATTCGCCAAAACTTTTTCAGTTGAAGCAAAAGTGATTGGAGATGGTGTAAGTGAAAAAGTTTATGCGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAAGTTGAAGGCTCAAGGCTTCAAACTGAAGTCAAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAGAACTCATTGGCTATGATGAAACTCCCATTGATGTAACAGATACTACCACCATCGGACAAGTAATGGTTAATGGAGACCTATGTAACAAGGTTAACCCTGAAATCCGCCCTATCCAGGAGGTATCTGATGCATCCTCCTCAAATGTTAAACCTGTTGTCCAACGGCTTCAATCTTCTCTTAAGGGAAAGCCTAGCGAAACCATTCGAAATCGTGTTTGTGTCAGTGACTCATCAAAGACAGCAAAAGCACGATTGTATGAATTATGTGCATCCTATTGCTGGAAAGCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCAAAGCGACGATGAAGATAGAAGAGGCCCCAGATACAGTTTTTGAGTTTATTGGGGAACCCTTGCCAAAGAAGAAAGATGCAGCAGATAGTGCAGCTGAGGGTGCATTATGGTATCTGCAAAAGGAAGGTTATCTGCATAATGCTAATGGTAATTGA 3957 0.4056 MWSSVSRVLAFGERCSRILLSGDLSERQALVEAEGISSDESVCDKYLAKTAELLTSKCMTGDNVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQKLKLLSQWKNDFLVGVHAGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNTEIAVRTSIETHNIPVEKIFRVDSSGASVSAGYSISLLHQYCSKLPHDEYFDPKPSFFYFDDSGGTVCQITLPSNAPIHQIVSAPYLSMEASKRDACLKAIEELYKLGSLNDCLLPKQNDAEPEVLDSSDSDDCEDNISRGELYEMLVPSAFRQSWKNTEKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTRLPLEAEKLELDLHLAHSRSVMTKFIPFGVVEFNNDEIKMAENFQEMFLKVILDRSEFVSKFVELGAESHTRTSTFYLLLPVILKEYNDVMKVDWKTVKRCLCSPIFRHPDDTFDKKVTPFDNHLHLANGYRSVGDVENSLVYTPHTNNFFFVTNVIYEKNGFSPFKDSDTSSYVDHLHEKFSITLKHPEQPLLHAKPLFKFHNLLHNRKHGDAEPHELEEYFVYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHHLHSSFPEAAEISALRVLEALTTEKCQERLSLERLEVLGDAFLKFAVGRHFFLLHDSFHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYALGHPCPRVCTEETEDSIHLCLNSGEEKRSVSGLRCDKNHHWLHRKTIADAVEALVGAFIVDSGFKAAFAFLTWIGIQVNFEASQVVNICTGSVDYFPLSAEVDIPSLESKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRALSVNNKAFACVAVDRCFDEFLLCDSNALTQAIKKYADCIRRPIPDCGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLPSKFAKTFSVEAKVIGDGVSEKVYATSQNKKEASRIASQLLFSKLKAQGFKLKSKTLEDVMKSTFKTEPELIGYDETPIDVTDTTTIGQVMVNGDLCNKVNPEIRPIQEVSDASSSNVKPVVQRLQSSLKGKPSETIRNRVCVSDSSKTAKARLYELCASYCWKAPSFECCKEEGPDHLKLFTCKATMKIEEAPDTVFEFIGEPLPKKKDAADSAAEGALWYLQKEGYLHNANGN 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi545g00004 1318 ProSiteProfiles PAZ domain profile. 557 656 IPR003100 GO:0005515
Vivi545g00004 1318 SMART helicmild6 111 201 IPR001650 -
Vivi545g00004 1318 CDD DSRM_DCL_plant 1239 1308 - -
Vivi545g00004 1318 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 265 355 IPR005034 GO:0016891
Vivi545g00004 1318 FunFam Dicer-like 103 551 654 - -
Vivi545g00004 1318 Pfam PAZ domain 557 677 IPR003100 GO:0005515
Vivi545g00004 1318 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1232 1308 IPR014720 -
Vivi545g00004 1318 Gene3D Dicer dimerisation domain 260 356 IPR038248 -
Vivi545g00004 1318 ProSiteProfiles Ribonuclease III family domain profile. 707 852 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 Pfam Dicer dimerisation domain 265 350 - -
Vivi545g00004 1318 SMART riboneu5 705 872 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 SMART riboneu5 908 1060 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 Pfam Ribonuclease III domain 928 1037 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 Pfam Ribonuclease III domain 721 852 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 SMART DRBM_3 1233 1307 IPR014720 -
Vivi545g00004 1318 SMART DRBM_3 1065 1129 IPR014720 -
Vivi545g00004 1318 FunFam Endoribonuclease dicer-like 1 887 1058 - -
Vivi545g00004 1318 SUPERFAMILY dsRNA-binding domain-like 1230 1312 - -
Vivi545g00004 1318 SMART PAZ_2_a_3 533 682 IPR003100 GO:0005515
Vivi545g00004 1318 Gene3D paz domain 551 664 - -
Vivi545g00004 1318 ProSitePatterns Ribonuclease III family signature. 928 936 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 CDD RIBOc 909 1059 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 Gene3D - 1239 1309 - -
Vivi545g00004 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 81 236 IPR001650 -
Vivi545g00004 1318 FunFam Endoribonuclease dicer-like 1 72 235 - -
Vivi545g00004 1318 Gene3D Ribonuclease III domain 700 863 IPR036389 GO:0004525|GO:0006396
Vivi545g00004 1318 Gene3D Ribonuclease III domain 890 1064 IPR036389 GO:0004525|GO:0006396
Vivi545g00004 1318 PANTHER DICER-RELATED 68 1135 - -
Vivi545g00004 1318 SUPERFAMILY dsRNA-binding domain-like 1019 1129 - -
Vivi545g00004 1318 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1232 1307 - -
Vivi545g00004 1318 FunFam Endoribonuclease dicer-like 1 260 356 - -
Vivi545g00004 1318 Pfam Helicase conserved C-terminal domain 86 199 IPR001650 -
Vivi545g00004 1318 SUPERFAMILY RNase III domain-like 892 1056 IPR036389 GO:0004525|GO:0006396
Vivi545g00004 1318 CDD RIBOc 706 862 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 Gene3D - 74 235 IPR027417 -
Vivi545g00004 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 216 IPR027417 -
Vivi545g00004 1318 SUPERFAMILY PAZ domain 556 654 IPR036085 GO:0005515
Vivi545g00004 1318 ProSiteProfiles Ribonuclease III family domain profile. 893 1037 IPR000999 GO:0004525|GO:0006396
Vivi545g00004 1318 SUPERFAMILY RNase III domain-like 705 866 IPR036389 GO:0004525|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi545g00004 99 231 Eukaryotic Initiation Factors Gene Family AT3G19760 31.884 2.26e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi545g00004 K11592 - gmx:100818702 2058.11