Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi545g00003 ATGCCGGACGGAGATTCCTCCACGGCCGGTACTGTTAAACTTCCGATGGAGACCACGGGAGACCTATTTGATCATGGACAGTCCCTGAATCTTACCCTAGTCAACAATCCTGACGGCAAAGTCAAAAAGGATCCTACAAAAATTGCACGAGAGTATCAATTGGAGTTATGCAAAATTGCTATGGAGGAAAATGTGATTGTTTATTTGGGAACAGGATGTGGGAAGACGCACATTGCTGTGTTGCTCATGCATGAAATGAGGCATTTGATCAAGAAGCCGAGCAAGGACGTGTGTGTTTTTCTCGCTCCTACTGTTGCTCTAGTTCATCAGCAAGCAAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGCGGGAGTTCCAAGCGCTCGAAATCGCATCAGCATTGGGATGAGGAGATTGAACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATGAAGATGGAGATGATTGCACTTTTAATATTTGACGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATTATGAAAGTCTTTTACAAAAATAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCATCTCCTGTTGTAGGAAAAGGCGGTTCTTCTGCAGCAAATCTACCGAAAAGCATCAATAGTCTCGAAAAAATGCTTAATGCTAAGGTATACTCAGTTGAAGACACTGCATTGGAATCTTTTGTTACCACTCCTGCAGTTCAGATATATCACTATAGTTCGACTGCAAATATGGAAACTAGCTTGTACTGGAAAATTGAAGAGATTAAATGCCAGTGCATAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGAATGAGCACAAAGAAACTTCTCAATCGGGTGCACGATAATGTGGTCTTCTGTCTCAAGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCAGAAGGAATTTCAAGTGACGAGTCTGTATGTGATAAATATCTTGCAAAGACAGCTGAACTACTTACTTCCAAATGCATGACAGGTGACAATGTTTCTGATCCATCTTCCTTGGAAATATTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGTCAATGGAAAAATGATTTTCTTGTAGGAGTCCATGCGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAAAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGGCTTGATATTCAGACATGTTGCCTTGTAATACGGTTTGATCTACCCGAAACCGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCCCGTATGCCTCGTTCAGAATATGCATTTTTGGTCGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATACGGAAATTGCTGTCCGAACATCCATTGAGACACACAACATCCCCGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTGCGGGATACAGTATCTCGTTGCTACACCAGTATTGTTCAAAGCTTCCGCATGATGAGTACTTTGATCCCAAGCCAAGTTTCTTTTACTTCGATGATTCAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTGCACCATATTTGTCTATGGAGGCTTCGAAAAGAGACGCATGTCTGAAAGCAATTGAAGAACTGTATAAATTAGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGATGCAGAGCCAGAGGTTTTGGACTCTTCTGATTCAGATGACTGTGAAGATAATATTTCAAGAGGAGAACTGTATGAGATGCTAGTTCCTTCTGCCTTTAGACAGTCATGGAAAAATACGGAGAAAACTGTCCGTCTCAACTCTTACTACATTAAATTTTGCCCCACTCCGGAGGATAGGGTCTATAAAAAATTTGGCTTGTTCATCATGACTCGTCTTCCACTGGAGGCAGAGAAACTGGAACTTGATCTTCATCTAGCTCACAGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAATGATGAGATAAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATCAGAATTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCTCACACGCGCACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATAATGATGTGATGAAAGTAGATTGGAAGACAGTAAAGAGATGCCTTTGTTCACCAATCTTCAGGCATCCAGATGATACATTCGATAAAAAGGTTACCCCTTTTGATAATCATCTGCATCTTGCCAATGGTTACAGAAGTGTTGGAGATGTTGAGAATAGTTTAGTGTATACTCCACACACGAATAACTTCTTTTTTGTCACAAATGTTATTTATGAAAAGAATGGATTCAGCCCTTTCAAAGATTCAGACACTTCAAGCTACGTGGACCACTTACATGAAAAGTTTTCCATTACTCTCAAACACCCCGAACAACCACTTCTACATGCAAAACCACTCTTCAAATTCCACAACCTGCTACACAATCGAAAGCATGGCGATGCGGAACCACATGAGCTAGAGGAATACTTTGTCTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTTGGCTTTTCCAAGGATATTGGTAGTTCAATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCACCTACATTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAAAAGTGTCAGGAGCGTCTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGGACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTAAATAACTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGCCATCCTTGTCCAAGAGTTTGTACCGAGGAAACTGAAGACAGCATACACTTATGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAAGTGGACTCCGATGTGATAAAAATCACCATTGGTTGCATAGGAAAACAATTGCTGATGCGGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCATTTGCCTTTCTTACATGGATTGGCATACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCACCGGAAGTGTTGACTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAAGTAAGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCTTTTGTACATCCTTCCTATAATAAGCATGGAGGAGGTTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTGTTGGATTATTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACGGATCTGAGAGCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTTGATCGCTGTTTTGATGAATTTCTTTTATGTGATTCAAATGCTCTGACCCAGGCAATAAAAAAGTACGCTGACTGTATTAGAAGACCTATACCGGACTGTGGCAATAATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCTTGTATTGGTGCTGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAGTTGCAGCTTCTGCCATCAAAATTCGCCAAAACTTTTTCAGTTGAAGCAAAAGTGATTGGAGATGGTGTAAGTGAAAAAGTTTATGCGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAAGTTGAAGGCTCAAGGCTTCAAACTGAAGTCAAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAGAACTCATTGGCTATGATGAAACTCCCATTGATGTAACAGATACTACCACCATCGGACAAGTAATGGTTAATGGAGACCTATGTAACAAGGTTAACCCTGAAATCCGCCCTATCCAGGAGGTATCTGATGCATCCTCCTCAAATGTTAAACCTGTTGTCCAACGGCTTCAATCTTCTCTTAAGGGAAAGCCTAGCGAAACCATTCGAAATCGTGTTTGTGTCAGTGACTCATCAAAGACAGCAAAAGCACGATTGTATGAATTATGTGCATCCTATTGCTGGAAAGCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCAAAGCGACGATGAAGATAGAAGAGGCCCCAGATACAGTTTTTGAGTTTATTGGGGAACCCTTGCCAAAGAAGAAAGATGCAGCAGATAGTGCAGCTGAGGGTGCATTATGGTATCTGCAAAAGGAAGGTTATCTGCATAATGCTAATGGTAATTGA 4893 0.4073 MPDGDSSTAGTVKLPMETTGDLFDHGQSLNLTLVNNPDGKVKKDPTKIAREYQLELCKIAMEENVIVYLGTGCGKTHIAVLLMHEMRHLIKKPSKDVCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKRSKSHQHWDEEIEQYEVLVMTPQILLHNLSHCFMKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGGSSAANLPKSINSLEKMLNAKVYSVEDTALESFVTTPAVQIYHYSSTANMETSLYWKIEEIKCQCIETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLKSLGIWGALQASRILLSGDLSERQALVEAEGISSDESVCDKYLAKTAELLTSKCMTGDNVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQKLKLLSQWKNDFLVGVHAGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNTEIAVRTSIETHNIPVEKIFRVDSSGASVSAGYSISLLHQYCSKLPHDEYFDPKPSFFYFDDSGGTVCQITLPSNAPIHQIVSAPYLSMEASKRDACLKAIEELYKLGSLNDCLLPKQNDAEPEVLDSSDSDDCEDNISRGELYEMLVPSAFRQSWKNTEKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTRLPLEAEKLELDLHLAHSRSVMTKFIPFGVVEFNNDEIKMAENFQEMFLKVILDRSEFVSKFVELGAESHTRTSTFYLLLPVILKEYNDVMKVDWKTVKRCLCSPIFRHPDDTFDKKVTPFDNHLHLANGYRSVGDVENSLVYTPHTNNFFFVTNVIYEKNGFSPFKDSDTSSYVDHLHEKFSITLKHPEQPLLHAKPLFKFHNLLHNRKHGDAEPHELEEYFVYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHHLHSSFPEAAEISALRVLEALTTEKCQERLSLERLEVLGDAFLKFAVGRHFFLLHDSFHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYALGHPCPRVCTEETEDSIHLCLNSGEEKRSVSGLRCDKNHHWLHRKTIADAVEALVGAFIVDSGFKAAFAFLTWIGIQVNFEASQVVNICTGSVDYFPLSAEVDIPSLESKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRALSVNNKAFACVAVDRCFDEFLLCDSNALTQAIKKYADCIRRPIPDCGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLPSKFAKTFSVEAKVIGDGVSEKVYATSQNKKEASRIASQLLFSKLKAQGFKLKSKTLEDVMKSTFKTEPELIGYDETPIDVTDTTTIGQVMVNGDLCNKVNPEIRPIQEVSDASSSNVKPVVQRLQSSLKGKPSETIRNRVCVSDSSKTAKARLYELCASYCWKAPSFECCKEEGPDHLKLFTCKATMKIEEAPDTVFEFIGEPLPKKKDAADSAAEGALWYLQKEGYLHNANGN 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi545g00003 1630 Gene3D - 386 547 IPR027417 -
Vivi545g00003 1630 Gene3D paz domain 863 976 - -
Vivi545g00003 1630 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1544 1619 - -
Vivi545g00003 1630 SMART DRBM_3 1545 1619 IPR014720 -
Vivi545g00003 1630 SMART DRBM_3 1377 1441 IPR014720 -
Vivi545g00003 1630 FunFam Endoribonuclease dicer-like 1 572 668 - -
Vivi545g00003 1630 Gene3D Ribonuclease III domain 1202 1376 IPR036389 GO:0004525|GO:0006396
Vivi545g00003 1630 ProSiteProfiles PAZ domain profile. 869 968 IPR003100 GO:0005515
Vivi545g00003 1630 Gene3D - 1551 1621 - -
Vivi545g00003 1630 SMART PAZ_2_a_3 845 994 IPR003100 GO:0005515
Vivi545g00003 1630 SMART ultradead3 45 242 IPR014001 -
Vivi545g00003 1630 CDD DSRM_DCL_plant 1551 1620 - -
Vivi545g00003 1630 FunFam Endoribonuclease dicer-like 1 384 547 - -
Vivi545g00003 1630 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Vivi545g00003 1630 SMART helicmild6 423 513 IPR001650 -
Vivi545g00003 1630 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1544 1620 IPR014720 -
Vivi545g00003 1630 FunFam Endoribonuclease dicer-like protein 44 283 - -
Vivi545g00003 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 528 IPR027417 -
Vivi545g00003 1630 Pfam PAZ domain 869 989 IPR003100 GO:0005515
Vivi545g00003 1630 SUPERFAMILY RNase III domain-like 1204 1368 IPR036389 GO:0004525|GO:0006396
Vivi545g00003 1630 CDD RIBOc 1018 1174 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 548 IPR001650 -
Vivi545g00003 1630 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 Gene3D - 49 303 IPR027417 -
Vivi545g00003 1630 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 SUPERFAMILY dsRNA-binding domain-like 1331 1441 - -
Vivi545g00003 1630 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 Pfam Ribonuclease III domain 1033 1164 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 Gene3D Ribonuclease III domain 1012 1175 IPR036389 GO:0004525|GO:0006396
Vivi545g00003 1630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Vivi545g00003 1630 ProSiteProfiles Ribonuclease III family domain profile. 1019 1164 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 FunFam Endoribonuclease dicer-like 1 1199 1370 - -
Vivi545g00003 1630 SUPERFAMILY dsRNA-binding domain-like 1542 1624 - -
Vivi545g00003 1630 Pfam Helicase conserved C-terminal domain 398 511 IPR001650 -
Vivi545g00003 1630 Pfam Dicer dimerisation domain 577 662 - -
Vivi545g00003 1630 FunFam Dicer-like 103 863 966 - -
Vivi545g00003 1630 PANTHER DICER-RELATED 63 1447 - -
Vivi545g00003 1630 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Vivi545g00003 1630 CDD DEXHc_dicer 47 246 - -
Vivi545g00003 1630 Gene3D Dicer dimerisation domain 572 668 IPR038248 -
Vivi545g00003 1630 SMART riboneu5 1017 1184 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Vivi545g00003 1630 SUPERFAMILY RNase III domain-like 1017 1178 IPR036389 GO:0004525|GO:0006396
Vivi545g00003 1630 SUPERFAMILY PAZ domain 868 966 IPR036085 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi545g00003 411 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.884 2.80e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi545g00003 K11592 - gmx:100818702 2543.46