Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi544g00022 ATGGCACCAAGTTTTGATTTTGCTAGTCTTCTGTGTACTGAAGACACCAGTTTTTTCGATGAAAATGATTTCGGGGGTTCAATGGAGGTTTTGGAAGAGCCATGGCAAGTTGAGTATGATCCTCCAATCCTTGATGAACCTCAGCAATTGGATGAACCAATTGGGGCGGTTCCACCTTTGCTGAGTGAGGAGAGTGTGAAGGTTTTGGTTGAAAAGGAATGCTGTCATGTGCCTGCTAGTGATTATGTCAGTAGGTTGAAAATTGGGGATTTGGATTTGGAGGGGAGAATGGAGGCTATTGATTGGATTCATAAGGTTGGAATGCATTTTGGTTTCGGGCCGTTGTGTGTGTATCTAGCTGTGAACTTCATGGATCGCTTCCTGTCTGCGGTTGATATGCTAAAGGATAGAATGTGGTCGATTCAACTCTTGGCTGTGGCTTCCTTGTATCTTGCAGCCAAAATTGATGAGACTGCTGTTCCTCGGTCTCTTGATATGCAGATGAATGAAGAGAAGTATTTATTTGATAACAAAACAATACTTAAGATGGAGCTTATGATACTAAGCACATTGAATTGGAGAATGCATTCAATCACACCTTTCTCCTTCATTGACTACTTTCTCAACAAGCTCACCGATGATCAGGTTCCAACCGAAGATTCTTTTCCGAAATCTTTCCAACTCATCATGAGTACTATAAGAGGACTTGACTTCATTCACTTCAAGCCATCCGAAATCGCAGCAGCTGTTGCGGTAACAATATCTGCCGAGGGCGAAAACCGAACCGTTGAAACTGATAAAGCAGTTTCTCTTCTGACTCAATACGTAGATAAGGAGAGAGTTATGAAGTGCATTGAAATGTTTCAACAGCTGGAATCATCATCAGACACTGCTTCTGCAGAGGATTCTCTATGCCTCAGCAACATAAATGCTGCTAATGCTACCACTTCATCATCACTTGCAAATTCTTCAAATAATTCCAATAGCCCTGAAGCCAAACGCATCAAACCAAACAAAACCAATGAAGCATAG 1032 0.4186 MAPSFDFASLLCTEDTSFFDENDFGGSMEVLEEPWQVEYDPPILDEPQQLDEPIGAVPPLLSEESVKVLVEKECCHVPASDYVSRLKIGDLDLEGRMEAIDWIHKVGMHFGFGPLCVYLAVNFMDRFLSAVDMLKDRMWSIQLLAVASLYLAAKIDETAVPRSLDMQMNEEKYLFDNKTILKMELMILSTLNWRMHSITPFSFIDYFLNKLTDDQVPTEDSFPKSFQLIMSTIRGLDFIHFKPSEIAAAVAVTISAEGENRTVETDKAVSLLTQYVDKERVMKCIEMFQQLESSSDTASAEDSLCLSNINAANATTSSSLANSSNNSNSPEAKRIKPNKTNEA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi544g00022 343 CDD CYCLIN_AtCycD-like_rpt2 198 287 - -
Vivi544g00022 343 MobiDBLite consensus disorder prediction 316 343 - -
Vivi544g00022 343 PANTHER CYCLINS 63 293 IPR039361 -
Vivi544g00022 343 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Vivi544g00022 343 Gene3D - 69 286 - -
Vivi544g00022 343 Pfam Cyclin, C-terminal domain 198 298 IPR004367 -
Vivi544g00022 343 CDD CYCLIN_AtCycD-like_rpt1 96 193 - -
Vivi544g00022 343 SUPERFAMILY Cyclin-like 60 196 IPR036915 -
Vivi544g00022 343 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vivi544g00022 343 MobiDBLite consensus disorder prediction 316 334 - -
Vivi544g00022 343 SMART cyclin_7 101 189 IPR013763 -
Vivi544g00022 343 FunFam D6-type cyclin 79 191 - -
Vivi544g00022 343 FunFam D6-type cyclin 192 286 - -
Vivi544g00022 343 Gene3D - 79 196 - -
Vivi544g00022 343 SUPERFAMILY Cyclin-like 179 311 IPR036915 -
Vivi544g00022 343 SMART Cyclin_C_2 198 320 IPR004367 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi544g00022 62 257 Core Cell Cycle Gene Families AT5G65420 48.990 4.27e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi544g00022 K18810 - tpra:123922384 400.208