Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi544g00002 ATGTTCTCAAACTTTCAACAACAACACAACCTTTTTCAAACCTCTCGTGAATGCCAAACCTCAGAAGACGATGAAAGCCGAGGCAGCGGTGGGCCCGCCACATTAACACCCCACAAACCTTTCTCCGCAATAAGCGGAGGCAGCGACGGTGCTACTATTGAGATTGGCCGTAGGCCCAGAGGCCGTCCACCTGGCTCCAAGAACAAGCCCAAAGCCCCACTCATAATTACTCACGAGCCCGAGCCCGCGATGAGCCCACACATTCTCGAAATCCCAGGAGGTAGTGATATAGTAGAAGCAATATCCCGGTTCAGTAACAGAAGAAAAACCGGGTTATGCATATTAACCGGTTCAGGCACCGTCGCTAACGTTACACTCCGTCAACCTTCAGCTCCTCCAGGCACCACCGTTATTTTTCACGGCCGTTTTAATATCCTCTCCATATCCGCCACCTTCTTCGTCCCATCAGAATCTTCGCCATCCTCGCCGCCGATCCATAAAGAATTCTCGATCTCCCTTGCTGGACCTCAGGGTCAGATTATTGGAGGGTTTGTCGTTGGGAGGTTGCTGGCTGCTGGTACGGTGTTTGTGATTGCTGCTTCGTTTAATAACCCTACTTATCATAGGTTGCCTTTGGAAGAGGATGTTAGGAATAATTCAGTTTCCGGCGGTTGTGATGAGAAGTCGCCACCGTTGTCCGGTGGTGAGAACTGTATGTATAGCTGTCAACTTCCTTCTGATGTGATTTGGGCTCCAACGCCGAGAACGCTTTTCTGA 777 0.5032 MFSNFQQQHNLFQTSRECQTSEDDESRGSGGPATLTPHKPFSAISGGSDGATIEIGRRPRGRPPGSKNKPKAPLIITHEPEPAMSPHILEIPGGSDIVEAISRFSNRRKTGLCILTGSGTVANVTLRQPSAPPGTTVIFHGRFNILSISATFFVPSESSPSSPPIHKEFSISLAGPQGQIIGGFVVGRLLAAGTVFVIAASFNNPTYHRLPLEEDVRNNSVSGGCDEKSPPLSGGENCMYSCQLPSDVIWAPTPRTLF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi544g00002 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 228 IPR014476 GO:0003680
Vivi544g00002 258 ProSiteProfiles PPC domain profile profile. 81 223 IPR005175 -
Vivi544g00002 258 CDD DUF296 86 202 IPR005175 -
Vivi544g00002 258 MobiDBLite consensus disorder prediction 1 17 - -
Vivi544g00002 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 214 - -
Vivi544g00002 258 PIRSF ESCAROLA 1 246 IPR014476 GO:0003680
Vivi544g00002 258 Gene3D - 85 221 - -
Vivi544g00002 258 FunFam AT-hook motif nuclear-localized protein 85 221 - -
Vivi544g00002 258 MobiDBLite consensus disorder prediction 1 73 - -
Vivi544g00002 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 204 IPR005175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi544g00002 49 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.589 1.35e-85 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi544g00002 - - cam:101500910 395.971