Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi542g00006 ATGGTAAGAGCTCCTTTTTATGACAAAAATGGAGTTAAGAAAGGTGCTTGGAGTAAAGAAGAAGATGAGTGTTTAACTGCTTATATTCAGAAACATGGTCATTCTAATTGGCGTCAACTCCCCAATCATGCAGGTTTAGCGAGATGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAAGCCAAATCTTAAACATGGAAACTACACAAGAGAGGAAGAAGAAACCATCATCAAATTCCACCAACAACTTGGAAATAAATGGTCTTTGATTGCTGAAAAACTGCCGGGAAGAACGGACCACGAGATAAAGAATTATTGGCATAGCTACTTAAAAAAGTGTTCAAAGTTAAATGACAACAAAACCACAAATTCTGAGTTGAATTCAGAATCATATGATACTCCTAAAGAAAATGATAGTATTCAGCATTCTGTTACACCTCAAAGCCCTACTTCTGATGTTGATAAGGACATTCATAACTATATTTTAGAAAGCTCGACATTGGCAATGCCGGTAGAAACATCAGCTGAAGAGAACTATTCGCCTAGCTCCATGAATAGTTCCTTGATGGAAGAAGACAATGGTGTTCCATGGTTGGCGTTCGAAGAATTCGAGGGCAATTTTTGGAATGAACCATTCGTTCTAGAGGATACATCAACTATTAAAGAGATTTCTATTGATGACATAGAGTTGATGATTTCAGACTACTATGATGGTTCATATATGTTTTAA 735 0.366 MVRAPFYDKNGVKKGAWSKEEDECLTAYIQKHGHSNWRQLPNHAGLARCGKSCRLRWLNYLKPNLKHGNYTREEEETIIKFHQQLGNKWSLIAEKLPGRTDHEIKNYWHSYLKKCSKLNDNKTTNSELNSESYDTPKENDSIQHSVTPQSPTSDVDKDIHNYILESSTLAMPVETSAEENYSPSSMNSSLMEEDNGVPWLAFEEFEGNFWNEPFVLEDTSTIKEISIDDIELMISDYYDGSYMF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi542g00006 244 CDD SANT 69 112 IPR001005 -
Vivi542g00006 244 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi542g00006 244 MobiDBLite consensus disorder prediction 139 156 - -
Vivi542g00006 244 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi542g00006 244 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi542g00006 244 CDD SANT 16 61 IPR001005 -
Vivi542g00006 244 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vivi542g00006 244 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi542g00006 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi542g00006 244 SMART sant 13 63 IPR001005 -
Vivi542g00006 244 SMART sant 66 114 IPR001005 -
Vivi542g00006 244 FunFam Transcription factor RAX3 7 67 - -
Vivi542g00006 244 Gene3D - 69 143 - -
Vivi542g00006 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi542g00006 244 MobiDBLite consensus disorder prediction 123 156 - -
Vivi542g00006 244 Gene3D - 13 66 - -
Vivi542g00006 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 189 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi542g00006 1 162 MYB Transcription Factor Family AT2G31180 51.724 3.04e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi542g00006 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi542g00006 K09422 - gmx:100782270 227.639