Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi540g00001 ATGGGTAGTGGGATGTATAAGAACTTGAGGGATCTTTTTATTCAAGTTGATTTTTCTGTTACACGTAATTCTAAAGAGTGTGATGAAGATGAAGAGAGCAATTGTTTGGACGAGAATGAAGAGGAAATGCAAGTTGAAGAAGATGAAGATAATGCGTTGATTCCTCCTGTTACAAGGACTATTGAAGATAACCATAATAAAGATGAATGGAGTTATAGATGGGAGGAAGAGGAAGAAATGGAGATGGAAGTACAAGATGATGGGTTGACTCCAAATGTTACGTGGACTGTTGTTGAAGATGATCACGGTGAAAACGAGTATGGAGATGATTGGGACTCTTATTGGGAAGAGGAAATGAGAATAGAAGAAGATAATAGATCGGTTATTGAAGTTGAAATTGATGATGATTATAGCTTCGATATTGAAGTTGAAAATGATGAAGATGAATGGAACTATGGTTGGGAAGAGGCAATCAGAATTGAAGAAGAAGATATTAGGTTTGTTCTTGCGGCACCGTCATGTATTGAAGGATTGAAGATGGTAACAATTGAAGAGGCGGAAAAATGTACTATTTGCCACGAAGATTTTAATGTTGGTGTCTGTATGCCATGTTCGCATATGTTTCATACGAATTGTATTAAGAATTGGTTGAATGTAGGCAACTCTTGCCCTTTATGTAGATTTCAGCTACCTACTAGTAGCACAAATGAATAA 714 0.3655 MGSGMYKNLRDLFIQVDFSVTRNSKECDEDEESNCLDENEEEMQVEEDEDNALIPPVTRTIEDNHNKDEWSYRWEEEEEMEMEVQDDGLTPNVTWTVVEDDHGENEYGDDWDSYWEEEMRIEEDNRSVIEVEIDDDYSFDIEVENDEDEWNYGWEEAIRIEEEDIRFVLAAPSCIEGLKMVTIEEAEKCTICHEDFNVGVCMPCSHMFHTNCIKNWLNVGNSCPLCRFQLPTSSTNE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi540g00001 237 Pfam Ring finger domain 188 227 IPR001841 -
Vivi540g00001 237 SUPERFAMILY RING/U-box 188 232 - -
Vivi540g00001 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 31 231 - -
Vivi540g00001 237 SMART ring_2 189 226 IPR001841 -
Vivi540g00001 237 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Vivi540g00001 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 237 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi540g00001 170 232 C3H Transcription Factor Family AT5G01980 42.254 6.04e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi540g00001 - - vvo:131632951 471.085