Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi53g00061 ATGGCTTCTGCTCCTTCTTCGTCTTCTTCTTCTTCCTCCAAACTATGCTTCAATTCTGACTGCAAAGACTTCAAGTCTGAAAGACCTAAGAAAGGTTGGAGATTACGTACTGGTGACCTAGCCGAACTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGAATTCATTGTGGGTGTATTATTTCCAGTAACACCTTCGTGTTGTTGGATCCAGGAGGAATTGAGTGTTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAATCTGCCATGGCCGCAATCTTTATCTCTTCAAAATCGTTTATCGGAGAGATTTAGAGACATATCTGCCAAAAATTGGAGTCAGTTAGCTGGATCGGGACCTGTACCCTGGAAGCAAGCACCCAGTTTATTCAATTCAGCTTCTTCATCTGACCAGCCTCCAGATGGGCATTCTGTCGTTGAGTTATCAAATACCTTTGACAAAATTTATGGCAATGAAAGGTTACCCCCCTCATCTTTGGAAAAGAAAAATGAAGATTTTTCTGGAATATCGGCTAATTGGAATGTCAAACTTGGTTCAAGGGAAATGGCGCTAATGAATGGAATGAAGAACGAGGACAAATCAAGTCCGTGTTTAAATATGTGCCAACAGCATCATTCCCTGAAGGAAGACTCATCTTCTCAACCATTTGGTTTATCTGTACCATATTCATCCCCAAATGAAAGAAATGGTCTAATTGGGGTAACTGGAATTCATTCACAACAAACTCCACCTCATCCAGGCAAGCAATTTTGTGGCACTATGCATTTAGCTCTTGACTCATCAGGTGAAGCTCAGGTTCGCAATGGACGACCTCGAGCAGATGCCCGAGGAAGAAGCCAGTTGTTGCCACGTTACTGGCCCAGGTGTACTGAGCTGGAGCTACAACAAATATCTATCGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACATTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTGGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTCCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAACTTCTATGCCACCTGATCAGGATAATGAAGCTAATAAGACTGGAAATGGATTTTCTGCACATGAAGTTGAGTTGGGTGATCCTAGTTCTTGGTCAAAAATTGATAAGTCGGGATACATTGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAATAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAATGACGACATAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACTATTTTTGCTAGTGATAATATGGGTGAAAGGATTCAGTGGGCTCAATGTGAAGATTGTCTGAAATGGCGCAAATTGCCAGCATGTGCACTTCTTCCATCAAAATGGACGTGTTCTGATAATTCTTGGGATCCAGAAAGGTCTTCTTGTTCAGTTGCACAAGAGCTAACAGCAGAACAACTTGAGAATTTGTTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTCGCAAATCTAGCTATCCTGGGGGAAGGGGAGGCTCTTCCGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTGTGTATCCAGCCTCCTAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTTTGTCTAACGGTGAAACGTCGTTTCCGTACTCTTATGTTACGGCGTGAGAAGAAACAATCCGAAAGAGAAGCAGAGACAACACGTAAAAAGATGCAGCAACAGAATTCCCAGCAATTGCCTTCATCCGAGATTTTGCTTGATGATGATTCTTTGCATAATAGTAATACAGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACGGTTCCGACGATGATCCTCACCGGATAAAATCATCTGTGTCTCCATTTAAAGGCCAAATTGATCTCAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCCGGTTCAGATTCTGGTGGTGTAATGAAGCTGCTTCACGATGCTACTGAGATTTGCCTCAAGCAGCAGCAGAATGTGTTGAACTCTGGTACTGGAGATTCATCAGGTAGTCAGTCACAGCAGGTAGGAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATCCATGGTAACAGTAGTCATAATGCAGATAAGGAACACACTCAGTCTTTGCCTATGAACGTGTGA 2658 0.4342 MASAPSSSSSSSSKLCFNSDCKDFKSERPKKGWRLRTGDLAELCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIISSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSLQNRLSERFRDISAKNWSQLAGSGPVPWKQAPSLFNSASSSDQPPDGHSVVELSNTFDKIYGNERLPPSSLEKKNEDFSGISANWNVKLGSREMALMNGMKNEDKSSPCLNMCQQHHSLKEDSSSQPFGLSVPYSSPNERNGLIGVTGIHSQQTPPHPGKQFCGTMHLALDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATTSMPPDQDNEANKTGNGFSAHEVELGDPSSWSKIDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENDDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFASDNMGERIQWAQCEDCLKWRKLPACALLPSKWTCSDNSWDPERSSCSVAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKMQQQNSQQLPSSEILLDDDSLHNSNTGDSSPNMNKEGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEICLKQQQNVLNSGTGDSSGSQSQQVGDVVREEKLSNGVIHGNSSHNADKEHTQSLPMNV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi53g00061 885 MobiDBLite consensus disorder prediction 737 773 - -
Vivi53g00061 885 MobiDBLite consensus disorder prediction 863 885 - -
Vivi53g00061 885 CDD B3_DNA 338 439 IPR003340 GO:0003677
Vivi53g00061 885 MobiDBLite consensus disorder prediction 443 457 - -
Vivi53g00061 885 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677
Vivi53g00061 885 SUPERFAMILY DNA-binding pseudobarrel domain 337 443 IPR015300 -
Vivi53g00061 885 Coils Coil 721 744 - -
Vivi53g00061 885 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270
Vivi53g00061 885 Gene3D - 571 624 - -
Vivi53g00061 885 Gene3D - 318 444 IPR015300 -
Vivi53g00061 885 MobiDBLite consensus disorder prediction 719 817 - -
Vivi53g00061 885 FunFam B3 domain-containing transcription repressor VAL1 318 445 - -
Vivi53g00061 885 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677
Vivi53g00061 885 MobiDBLite consensus disorder prediction 836 885 - -
Vivi53g00061 885 MobiDBLite consensus disorder prediction 721 736 - -
Vivi53g00061 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 13 844 - -
Vivi53g00061 885 SMART B3_2 340 440 IPR003340 GO:0003677
Vivi53g00061 885 MobiDBLite consensus disorder prediction 440 465 - -
Vivi53g00061 885 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270
Vivi53g00061 885 MobiDBLite consensus disorder prediction 836 855 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi53g00061 270 725 B3 DNA Binding Superfamily AT4G32010 55.338 1.16e-162 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi53g00061 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi53g00061 K09287 - gmx:100782114 1547.33