Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi53g00060 ATGGCTACCCTGTCTCAGAAGGAAGCTGACATTCAGATGATGTTGGCCGCTGACGTCCACCTCGGCACCAAAAATTGTGACTTCCAAATGGAGCGTTACATTTTCAAACGCCGAAATGACGGTATTTACATTATAAATCTTGGGAAGACATGGGAAAAACTTCAACTTGCTGCAAGGGTTATTGTTGCGATTGAGAATCCTCAGGACATTATTGTCCAGTCTGCTAGGCCTTATGGACAAAGAGCTGTTCTCAAGTTTGCTCAGTATACTGGAGCTCATGCTATCGCTGGAAGGCACACTCCTGGAACCTTCACCAATCAACTTCAAACTTCCTTCAGTGAGCCCCGTCTTCTCATCCTCACTGATCCAAGAACTGATCACCAGCCAATCAAAGAAGCCGCACTTGGAAATATTCCCACAATTGCATTCTGTGACACTGATTCTCCTATGCGGTATGTTGATATTGGAATTCCTGCCAACAACAAGGGAAAGCATAGCATAGGTTGTCTCTTTTGGCTTCTGGCTAGGATGGTGTTGCAGATGCGCGGTACTATTCGCCCAGGCCTTAAGTGGGATGTGATGGTGGATCTATTCTTCTATAGAGAACCTGAAGAGGCCAAGGAGCCAGAGGAGGATGAAGTTCCTCCCCCAGAATATGTCATTGCCGACTTCAATGCAGCTCCATCTGATGGTCAGTGGCCCGCTGCAATTGATCAGTCATGGACAGAGGCTGCTCCTCAGCCTATTCCAGCAGTTCCAGCAGTCAACTGGACAGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGACGCAGTTCCAGCACCACAACAAATTGCCACTCCCGGAATTGAATCAGTGCCAGCAACCGGCTGGGATTAA 876 0.4852 MATLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEPEEDEVPPPEYVIADFNAAPSDGQWPAAIDQSWTEAAPQPIPAVPAVNWTAPEAVAGDWGDAVPAPQQIATPGIESVPATGWD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi53g00060 291 Hamap 40S ribosomal protein SA [rps-0]. 2 244 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vivi53g00060 291 Gene3D - 10 214 - -
Vivi53g00060 291 PANTHER 40S RIBOSOMAL PROTEIN SA 3 277 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi53g00060 291 CDD RPS2 14 180 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 11 29 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 41 50 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 115 132 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 153 167 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 90 107 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 PRINTS Ribosomal protein S2 signature 132 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 ProSitePatterns Ribosomal protein S2 signature 2. 115 139 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 MobiDBLite consensus disorder prediction 265 291 - -
Vivi53g00060 291 Pfam Ribosomal protein S2 14 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 Pfam Ribosomal protein S2 113 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi53g00060 291 SUPERFAMILY Ribosomal protein S2 6 196 IPR023591 -
Vivi53g00060 291 FunFam 40S ribosomal protein SA 10 216 - -
Vivi53g00060 291 NCBIfam 30S ribosomal protein S2 6 202 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi53g00060 4 291 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.103 4.09e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi53g00060 K02998 - gmx:548014 504.982