Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi53g00018 ATGGGAAGAACACCTTGTTGTGATAAAAATCATGGTCTCAAGAAAGGACCATGGACTACTGAGGAGGATGAAAAACTCATTGATTACATTCAGAAACATGGTTATGGCAATTGGAGAACACTCCCAAAAAATGCTGGTTTGCAACGATGTGGTAAAAGTTGTCGTCTTCGTTGGACAAATTATCTTCGACCGGATATAAAACGTGGTCGATTTTCATTTGAAGAGGAAGAGACAATAATTCAACTTCACAGTATTCTCGGAAACAAGTGGTCTACAATTGCATCTCGACTACCAGGAAGAACAGACAACGAAATAAAGAACTACTGGAACACGCACATTCGAAAACGGCTTTTGAGAATGGGAATCGATCCGGTAACACATAGTCCACGACTCGATTTACTAGACCTCTCTTCAATTCTATGTTCATCTCTCTATGGTTCATCATCATCATCACAAATCAACAACTTCCAAACACTCCTTACCATGCAACAACAACAACAACCATTGATGAACCCTGAGCTTCTCAAACTTGCTTCATCACTCTTCAACACCTCATCACACCAACACCAACAACAACATCAACAACAAGAGGATTATAGTAATAATCAACCTTGTAATCCCCAAACACAAAACCAATTTCCACCTTCACATTTTGTCCAATTCCAAGACCAAATCCAACAAGTACCTAGTACTAATTCAAATGTTTGTACTAATGTCTCATCTTCATTTCACAATCATTCACATTTGTTTGATCCAAATGTGAACACATATCCATCAAATTTCACCGACCATAACTCTTACAACAATCAAGATTCTGTTCCTGATATTGATTGGCTAGAAAATAATGGATTTGGTTTAAGTACTTTTAAAGAGGAAATTGATTATACCCATCAATTATCAAGCTATAATCAATACTATGGTTCTGATTATAATCATAATCAAAATCTTATGATTCATCAAACTTCAAACCAAATTCTATCAACACCATCTTCAAGTCCAACGCCGATGAACTCGAACTCGACCGGTATTATTGGGAGCAGCAATACAGAAGATGAGAAAGAAAGCTATGATAGTTGTAATAACAGAATGAAATTTGAAATTCCTTTGCATATTTTAGATTCCAATGAGTTCATGTAA 1137 0.3624 MGRTPCCDKNHGLKKGPWTTEEDEKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSSSSQINNFQTLLTMQQQQQPLMNPELLKLASSLFNTSSHQHQQQHQQQEDYSNNQPCNPQTQNQFPPSHFVQFQDQIQQVPSTNSNVCTNVSSSFHNHSHLFDPNVNTYPSNFTDHNSYNNQDSVPDIDWLENNGFGLSTFKEEIDYTHQLSSYNQYYGSDYNHNQNLMIHQTSNQILSTPSSSPTPMNSNSTGIIGSSNTEDEKESYDSCNNRMKFEIPLHILDSNEFM 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi53g00018 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Vivi53g00018 378 FunFam MYB-related transcription factor 14 67 - -
Vivi53g00018 378 SMART sant 67 115 IPR001005 -
Vivi53g00018 378 SMART sant 14 64 IPR001005 -
Vivi53g00018 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi53g00018 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vivi53g00018 378 MobiDBLite consensus disorder prediction 326 349 - -
Vivi53g00018 378 Gene3D - 14 67 - -
Vivi53g00018 378 MobiDBLite consensus disorder prediction 183 215 - -
Vivi53g00018 378 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vivi53g00018 378 FunFam Transcription factor MYB39 70 131 - -
Vivi53g00018 378 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi53g00018 378 Gene3D - 70 117 - -
Vivi53g00018 378 MobiDBLite consensus disorder prediction 326 355 - -
Vivi53g00018 378 CDD SANT 70 113 IPR001005 -
Vivi53g00018 378 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi53g00018 378 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vivi53g00018 378 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vivi53g00018 378 CDD SANT 17 62 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi53g00018 1 378 MYB Transcription Factor Family AT4G21440 52.835 1.05e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi53g00018 Myb_DNA-binding 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi53g00018 K09422 - gmx:778071 380.178