Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi53g00016 ATGGTGAAAAAATCAACAAAGGAGGAGGTGAAACAGGAATTACCGCCGGACGATCTCCGGTGCAGCCGCACCGACGGCCGGCAATGGCGGTGCAAACGGAGAGCGATGGAGAACGTGAAGCTATGCGAGGTTCACTATCTGCAAGGCCGGCATCGTCAGAACAAAGAGAGGGTACCGGAGTCACTGAAACTTTCAAACGACGTGAAGGTGAAGAAGAAGAAGAAGAAAAACGACGTCGTTGAAATTAGGTCAAAGAAGAACAAGAAGAAGAAGAGGAAGCATGTTGATGTGCAATTGGAGTTGATAAGGATGGTTTTGGAGAGAGAGGTTGATAAGAAGAAGAATGTGAAGAGGAATAACAATGAGGAAATTGAATTGCATTACAGTGAGGGTGAATTGAGGAAGGAATTGCCTAATGGGGTTATGGAAATTGCTCCTGTTTCGACTCCGTGTGATGTGGAGTTTCAGAGTAATGGGAAAACGTTTGTCGCGCCGCGTTACTTCAGGTCCAAGAATGTTGATAAGAGAGTCCCTTTTGATAATTTGCAGGTTTTGAAGAAGTGTGGGAGGAAGAAGTGTCATTGTTGCCAGAGTAGTGATTCTGGGAATCTTATAAAGTGCTCCAACTGCCAGAAGGAGTTTTTCTGCCTGGATTGCATTAAACGAAGGTATTCCGAGACTCCTAATGAGGTTAAGACGGCGTGTCCAGTTTGTCGAGGAACATGTACTTGTAAATATTGTCGGGCAGGTCTTTGTAAAGACAATGAAAGTAAGGACCATTTGGCTGGCAGAAATAGTGTTCATAGGATATTGCATTTTCATTATTTGATCTGTATGCTCCTTCCTGTACTAAAACAAATAAGTGAGGAGCAGCGTACCGAGCTAGAAACAGAAGCGAAAAATAAAGGGAAAAATATTTCTGATATTCTCATCAAGCAAGTCGAATTTGGCCGCAATGAGAAAAATAACTGCAATTACTGCCACTCGTCGATTCTAAATCTTCACAGAAGCTGTCTGAGTTGTTCCTACAGTCTTTGTTTAAGATGTTGCCAGGCATTAAGTCAGGGGAGCCCTTTTGAGCATATAAATTCTTTGGTGACCGAGATACCTGATAAAATGGACGTTTGCATTGATAATGAAAGTTACCCTTCGGATGATAATACCATTTCTAGCGACGATGTAACTGATACTTCACTGTTATCTGATTGGACTGGTTGTAATGGCACTACCGACAGTGTATCATGTCCTCCTTCAGAACTAGGTGGTTGTGGTAATACCCACCTTGACTTGAGATGTGTTTTTCCTTTAAGTTGGATCGAAGAAATGGAAACGAAGGCAGAAGAAGTAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAATTCAAGTTGTTCACTTTGTAGTGACAAAGATCATAAAACTAACAGGCATAAACAATCACAAGAAGCGGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGCTTTCGCCATCAGTTCAGATCATTGCGAACACTTCCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTCCGAAATGTGCTCCGAAGTAGAAAAAACCTCAGTTGGGATCCTTTGGTCATGTTCTGTGATTATCTTGAGGAGAGCATTTCAAGATACGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAAACAGCATTTTACTGGATCTCTTAGATGTCGACCTCAGAAAAATGATTTCCATGAGATGCTGAAATTAAATGGATGGTTATCTTCCCAGCTATTCAAAAAACAGTTTCCAGATCATTTTGCTCAAGTAATTGATGCTCTTCCACTTCAAGAATACATGAATCCCATGTCCGGTCTTCTGAATTTAGCGGCATATATGCCAGATGGGAGTGCAAAACATGACAAAGGCCCATATGTCCATATTTCTTATGGCTGTGCTGACAAGGAAGCTTGTTCCGTGCTAAATCTCTCTTATGAACCATATGATGTGGTTGATATCATGGCATATACCACAGATGCTCCTCTCTCACCAGACAATCTTGCTAATGTAACTAAGCTATTGAAAAAGCATCAAACTCTGTGTCAAAGGGGGTCGCCAATGAATACTTCCGAACACGTAGAAGACAAGGAACAAAAAGAAACAGAGAGTATTGCCATGGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACATCTAGCATTAATGAAGTCAAAACAATGCCTAGTCAGAGTTTAGAGGAAAATGCTTCCATCAATGAAGAATGTGTTTCTGGTTCAGATTCAGATTCAGATTCTGAGAAAACACAAAGCTCTTTACCTCTCCGCAAGACAGTTCGAAGCACTGAAATGTATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGAACCAAAGCTTCTAGAATATCTCAAAAGACATGCTGATGAATTTTCTTGTGCCAGTGAACATCACGGCAAGAAGATGGTTCAGCCAATTCTAGATCAGAGCATCTTTCTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTCAATATCGAACCGTGGACCTTTGAGCAACATGTTGGAGAAGCTGTTATCGTTCCCGCCGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTCTGTCTCCTGAGAATGTTGCAGAATGTATCCAATTGACTGATGAGATTCATTTGCTTCCTGAAGACCATATAGCAAAAGTAGACATGCTGGAGGCGAGGAAAATGGCTCTTAATAGTGTGGAGACGGCTATAAAAGAAATACATGAGCTCACTTCCAATCCAAAACATGATTGA 2859 0.4117 MVKKSTKEEVKQELPPDDLRCSRTDGRQWRCKRRAMENVKLCEVHYLQGRHRQNKERVPESLKLSNDVKVKKKKKKNDVVEIRSKKNKKKKRKHVDVQLELIRMVLEREVDKKKNVKRNNNEEIELHYSEGELRKELPNGVMEIAPVSTPCDVEFQSNGKTFVAPRYFRSKNVDKRVPFDNLQVLKKCGRKKCHCCQSSDSGNLIKCSNCQKEFFCLDCIKRRYSETPNEVKTACPVCRGTCTCKYCRAGLCKDNESKDHLAGRNSVHRILHFHYLICMLLPVLKQISEEQRTELETEAKNKGKNISDILIKQVEFGRNEKNNCNYCHSSILNLHRSCLSCSYSLCLRCCQALSQGSPFEHINSLVTEIPDKMDVCIDNESYPSDDNTISSDDVTDTSLLSDWTGCNGTTDSVSCPPSELGGCGNTHLDLRCVFPLSWIEEMETKAEEVVCSYEVPEILDKNSSCSLCSDKDHKTNRHKQSQEAARREDSNDNCLFYPTAFAISSDHCEHFQKHWGKGHPVVVRNVLRSRKNLSWDPLVMFCDYLEESISRYENNKDLLEACLDWCEVEINIKQHFTGSLRCRPQKNDFHEMLKLNGWLSSQLFKKQFPDHFAQVIDALPLQEYMNPMSGLLNLAAYMPDGSAKHDKGPYVHISYGCADKEACSVLNLSYEPYDVVDIMAYTTDAPLSPDNLANVTKLLKKHQTLCQRGSPMNTSEHVEDKEQKETESIAMEGTDFYRRVNRTSSINEVKTMPSQSLEENASINEECVSGSDSDSDSEKTQSSLPLRKTVRSTEMYSVAQWDVFRRQDEPKLLEYLKRHADEFSCASEHHGKKMVQPILDQSIFLDTTHKMRLKEEFNIEPWTFEQHVGEAVIVPAGCPYQIRNSKCCVHVVLEFLSPENVAECIQLTDEIHLLPEDHIAKVDMLEARKMALNSVETAIKEIHELTSNPKHD 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi53g00016 952 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Vivi53g00016 952 MobiDBLite consensus disorder prediction 748 786 - -
Vivi53g00016 952 SMART cupin_9 608 912 IPR003347 -
Vivi53g00016 952 Pfam WRC 16 56 IPR014977 -
Vivi53g00016 952 ProSiteProfiles Zinc finger RING-type profile. 193 239 IPR001841 -
Vivi53g00016 952 SUPERFAMILY Clavaminate synthase-like 801 940 - -
Vivi53g00016 952 ProSiteProfiles JmjC domain profile. 617 912 IPR003347 -
Vivi53g00016 952 Pfam JmjC domain, hydroxylase 794 893 IPR003347 -
Vivi53g00016 952 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 948 IPR045109 GO:0032454|GO:0033169
Vivi53g00016 952 Gene3D Cupin 499 921 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi53g00016 16 55 GRF Transcription Factor Family AT4G37740 52.500 4.37e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi53g00016 JmjC 6.1e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi53g00016 K15601 - gmx:100799234 1157.51