Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi532g00015 ATGAAGTTCTCTTTTCCTGGTTGTTTATTTTCTTGTTCCACTGAAGTTAACAACAATGATTTTGATGATGGAGAGATTAATGATGGAAGCTTTCGTATATTCACTTATCAACAACTGAAATCTGCTACTGGTAATTTCAGTGAAAAAATTGGACAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTTAAGGATGGATCTTTTGTTGCTGTGAAAGTGCTTTCTATTGAGATTGAATCCATGAGAGGAGAGAGGGAATTTGTTGCGGAATTGGCTGCACTAGCAAATATGAAGCATCATAATCTTGTTAGCCTTAAAGGGTGTTGTGTTGAAGGAGCAAAAAGATACTTGGTTTATGATTACATGGAGAATAATAGCCTCCATCACACTTTCTTAGGTTCGGAGGATAAAAGGGAGAGATTCAGTTGGGAGGAAAGGAAGAGTATATCAATCGGCGTGGCTCGTGGACTTTCGTATCTTCATGAGGAGTTGAAGCCTCATATAGTGCATAGAGACATCAAAACAAAGAATATACTAATTGACAGAAGTTTTACACCAAAACTTGCTGATTTCGGTTTGGCGAAACTAATGAGAGATGAGAAATCTTACATTAGCACTAGAGTTGCAGGGACATTGGGTTATTTGGCTCCTGAGTATGCAAGTTCTGGACAACTAAGAAGGAAATCGGATGTTTATAGCTTTGGAGTATTGCTTTTGCAAGTTATCACTGGCTTGGCTGTTGTAGATGCCTATAAAGATATCGAACGTTTCATTGTCGAAAAGGCTTATGCAGCTTATGTGGCCAAGGATCTATTAAGAATTGTGGATCCTGTGCTTAATAGAAACTATTCAGACAAAGAAGCCACAAAATTCCTCACAGTTGGATTACTTTGCGTGCAAGAAACCGCAAGATTACGGCCACGAATGTCAGAGGTTGTAGAAATATTGACCAATAACAATGTCGATCTCAAAGATGTTCACATTTCAAAACCAGGTTTTGTTGCTGATCTCAGAAACATCAGAATAAAACAGAACATGATAACAAGCTCGCCACAAGAATCGGGCTCGTCAGGAACAACCTTTGCAAGCTCCATCTGGAGTGTGGGAAATCTCGCCCGTTAA 1122 0.3939 MKFSFPGCLFSCSTEVNNNDFDDGEINDGSFRIFTYQQLKSATGNFSEKIGQGGFGSVYKGRLKDGSFVAVKVLSIEIESMRGEREFVAELAALANMKHHNLVSLKGCCVEGAKRYLVYDYMENNSLHHTFLGSEDKRERFSWEERKSISIGVARGLSYLHEELKPHIVHRDIKTKNILIDRSFTPKLADFGLAKLMRDEKSYISTRVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQVITGLAVVDAYKDIERFIVEKAYAAYVAKDLLRIVDPVLNRNYSDKEATKFLTVGLLCVQETARLRPRMSEVVEILTNNNVDLKDVHISKPGFVADLRNIRIKQNMITSSPQESGSSGTTFASSIWSVGNLAR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi532g00015 373 SMART serkin_6 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi532g00015 373 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 122 327 - -
Vivi532g00015 373 Pfam Protein kinase domain 47 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi532g00015 373 FunFam Serine/threonine-protein kinase receptor 16 121 - -
Vivi532g00015 373 CDD STKc_IRAK 50 318 - -
Vivi532g00015 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vivi532g00015 373 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vivi532g00015 373 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vivi532g00015 373 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Vivi532g00015 373 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 352 - -
Vivi532g00015 373 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vivi532g00015 373 ProSiteProfiles Protein kinase domain profile. 44 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi532g00015 34 316 Receptor kinase-like Gene Family AT1G53430 49.826 1.39e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi532g00015 Pkinase 5.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi532g00015 - - gmx:100813945 552.747