Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi532g00011 ATGGGTAACGTAGGAAGTTCACACAGTCGTCGGAGACACGGCGGCGGTGGGAGTGGCCGACGTGTTCATCCACCGGTGATTCCTCCTCCTCCTGTACAAGAAGCTGTGGTTAACCCATACGCTCATCCTGCCGCTGCTCCAGTGTACCAGAATTACCCGAATAACTATCCTCCGCCGGGGAGTGTTCCGATGCCGTTACCTGCGCCGTATGATCATCATCACCGGACGGGGATGGAACCGGTATATGGACGGTATCCGGCGCCACCGCCGGCGCCGTATGTGGAGCATCAGAAAGCTGTTACTATTAGGAATGATGTTAATATCAAGAAGGAGACGCTGAGGATTGAAGCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTGCGTTTACTTTTGATGCCACTGTTTCTGGGAGCATCGCGGTACTTTTCTTTGCAAAGGAAGGTGACGGGTGTGTCCTTACCTCGACGAAGGAAAATGTTCTTGCACCGGTTATTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTATACAGCCAGCTGGAACTGGTATCACTTTCTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGGCGACGTGGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGTGCCGAGGATGGATCAAATGAAACTCCTAAATCTGGTAGTAAAACAAACACAAACAACTCTCAGATAACTCAAGCCGTATTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTACGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTCGAAAGTGACATGGATGGGAATGACCCTGGAAAAGAGTGCGTAATCTGCTTGTCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGTGAATGCGCGAAGGTCTTAAGGTTCCAGACGAATAGATGTCCAATCTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATCAGAGTTGGGCCCGAGCCTGAGCCTGAATCAAAGCCCGAGGCCGAGAAGTGA 1062 0.4934 MGNVGSSHSRRRHGGGGSGRRVHPPVIPPPPVQEAVVNPYAHPAAAPVYQNYPNNYPPPGSVPMPLPAPYDHHHRTGMEPVYGRYPAPPPAPYVEHQKAVTIRNDVNIKKETLRIEADEENPGQFLVAFTFDATVSGSIAVLFFAKEGDGCVLTSTKENVLAPVIINFQQGLGQKFIQPAGTGITFSMFEESELLKVGDVDVYPVAVKADASSGAEDGSNETPKSGSKTNTNNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDMDGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIRVGPEPEPESKPEAEK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi532g00011 353 ProSiteProfiles Zinc finger RING-type profile. 289 328 IPR001841 -
Vivi532g00011 353 SMART ring_2 289 327 IPR001841 -
Vivi532g00011 353 MobiDBLite consensus disorder prediction 1 31 - -
Vivi532g00011 353 Pfam Zinc finger, C3HC4 type (RING finger) 287 333 - -
Vivi532g00011 353 CDD mRING-HC-C3HC5_MGRN1-like 287 328 IPR045195 -
Vivi532g00011 353 PANTHER MAHOGUNIN 1 339 IPR045194 GO:0061630
Vivi532g00011 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Vivi532g00011 353 MobiDBLite consensus disorder prediction 215 234 - -
Vivi532g00011 353 MobiDBLite consensus disorder prediction 212 234 - -
Vivi532g00011 353 FunFam probable E3 ubiquitin-protein ligase LOG2 273 338 - -
Vivi532g00011 353 SUPERFAMILY RING/U-box 288 334 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi532g00011 82 307 C3H Transcription Factor Family AT3G09770 65.086 4.52e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi532g00011 - - gmx:100783831 485.723