Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi532g00008 ATGGCAACTCAAATTTCCATGGATGATAATAACCAAGGTGGTGCCAATATTCAAAATAGAGTTAATATCTCAATTCAAAAGAGCATGGCATCATCTGAAATAACTGAGGAACTCACAAGTGGACAAAGAACAACTCAAAACCTTAGCATAGAGACACCAAAAAGAACTCAAGAAGAAGCAAAAGAAGATTTCTTGAGAATCAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCTCCTTGCGCAAGTCCCGGTTTCATTCCAAACAGTGATCCCCCTGATGCTTCTAGTTCTACAAACAGACCAACTCTTAAAAAATCTCTTATACCTAAACTCAGTTTCAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCGCTCGAAGGTTCGTCCTCAGTATCGTCGAAAAAGCCTTTTCTTTCTAGGACGCTGTCTCGTATCAAATTGAAAGGGAGGAAAACATCTTCTTTGCCTGCATCGCCGGTTCCTCGTTCAAATCCTGCGTCAGTACATGGCGGAAAAGCTTATCCAGCAATGGCCAGTCCAATTTTACAGGAGAAAGATCCGCGGTTACCAATTCATCGTTCTCGATCTGTTCCTGCATTTACTGGAGAAGATACTTCTGTAGGTGGCAGGTTTCGAATTTTTCGGATGATACCACAATCGAATGAGAAAATTTCCACCGCAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACTGAGGACGGAGGCGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCGGAGAATTTTAAATTGGAGTGCAGCTGCAAAGGCGAGCTTTCGTTAGCGCATAAAGAATGTGCGGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTGTGCAAGCAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATAGCGCGAACTTGCAATCGAACAGAGGTCACTTAGACGAATCTTCTCATTACAGGGTTTGGCAGGATGCTCCGATTCTTGTCATTGTCCACATGCTGGCCTACTTCTGTTTTCTTGAGCAGCTTCTTGTTTCGAGTATGGGATCCGGTGCTATTGCCATGTCGCTTCCGTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACAATGGGTGAGACTTTTTCGATTCTCATTCATCGCAGTGACTTGAATTTGGATTGCTTATATTATATCACACACAATTCATATAATTCCTTCAAATTATTCTCAGTTAGGAGGAATCAAGTTTGGATTTATGGAACATCAAAATCCCAACAAAAGCTTAATCAAAACTAA 1353 0.4065 MATQISMDDNNQGGANIQNRVNISIQKSMASSEITEELTSGQRTTQNLSIETPKRTQEEAKEDFLRINIPLTPSPRRVIFSPCASPGFIPNSDPPDASSSTNRPTLKKSLIPKLSFKFKNTTSEIEKAAFLALEGSSSVSSKKPFLSRTLSRIKLKGRKTSSLPASPVPRSNPASVHGGKAYPAMASPILQEKDPRLPIHRSRSVPAFTGEDTSVGGRFRIFRMIPQSNEKISTATFAASPTGENVETEDGGEDIPEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSANLQSNRGHLDESSHYRVWQDAPILVIVHMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMGETFSILIHRSDLNLDCLYYITHNSYNSFKLFSVRRNQVWIYGTSKSQQKLNQN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi532g00008 450 MobiDBLite consensus disorder prediction 157 179 - -
Vivi532g00008 450 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Vivi532g00008 450 MobiDBLite consensus disorder prediction 82 105 - -
Vivi532g00008 450 SMART ringv_2 261 310 IPR011016 GO:0008270
Vivi532g00008 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Vivi532g00008 450 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Vivi532g00008 450 CDD RING_CH-C4HC3_MARCH 262 310 - -
Vivi532g00008 450 SUPERFAMILY RING/U-box 258 313 - -
Vivi532g00008 450 PANTHER OS02G0165000 PROTEIN 28 397 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi532g00008 256 316 C3H Transcription Factor Family AT2G37950 43.750 5.61e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi532g00008 - - vvo:131632871 893.649