Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi532g00006 ATGGCAACTCAAATTTCCATGGATGATAATAACCAAGGTGGTGCCAATATTCAAAATAGAGTTAATATCTCAATTCAAAAGAGCATGGCATCATCTGAAATAACTGAGGAACTCACAAGTGGACAAAGAACAACTCAAAACCTTAGCATAGAGACACCAAAAAGAACTCAAGAAGAAGCAAAAGAAGATTTCTTGAGAATCAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCTCCTTGCGCAAGTCCCGGTTTCATTCCAAACAGTGATCCCCCTGATGCTTCTAGTTCTACAAACAGACCAACTCTTAAAAAATCTCTTATACCTAAACTCAGTTTCAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCGCTCGAAGGTTCGTCCTCAGTATCGTCGAAAAAGCCTTTTCTTTCTAGGACGCTGTCTCGTATCAAATTGAAAGGGAGGAAAACATCTTCTTTGCCTGCATCGCCGGTTCCTCGTTCAAATCCTGCGTCAGTACATGGCGGAAAAGCTTATCCAGCAATGGCCAGTGAGAAAGATCCGCGGTTACCAATTCATCGTTCTCGATCTGTTCCTGCATTTACTGGAGAAGATACTTCTGTAGGTGGCAGGTTTCGAATTTTTCGGATGATACCACAATCGAATGAGAAAATTTCCACCGCAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACTGAGGACGGAGGCGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCGGAGAATTTTAAATTGGAGTGCAGCTGCAAAGGCGAGCTTTCGTTAGCGCATAAAGAATGTGCGGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTGTGCAAGCAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATAGCGCGAACTTGCAATCGAACAGAGGTCACTTAGACGAATCTTCTCATTACAGGGTTTGGCAGGATGCTCCGATTCTTGTCATTGTCCACATGCTGGCCTACTTCTGTTTTCTTGAGCAGCTTCTTGTTTCGAGTATGGGATCCGGTGCTATTGCCATGTCGCTTCCGTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACAATGGGTGAGACTTTTTCGATTCTCATTCATCGCAGTGACTTGAATTTGGATTGCTTATATTATATCACACACAATTCATATAATTCCTTCAAATTATTCTCAGTTAGGAGGAATCAAGTTTGGATTTATGGAACATCAAAATCCCAACAAAAGCTTAATCAAAACTAA 1341 0.4072 MATQISMDDNNQGGANIQNRVNISIQKSMASSEITEELTSGQRTTQNLSIETPKRTQEEAKEDFLRINIPLTPSPRRVIFSPCASPGFIPNSDPPDASSSTNRPTLKKSLIPKLSFKFKNTTSEIEKAAFLALEGSSSVSSKKPFLSRTLSRIKLKGRKTSSLPASPVPRSNPASVHGGKAYPAMASEKDPRLPIHRSRSVPAFTGEDTSVGGRFRIFRMIPQSNEKISTATFAASPTGENVETEDGGEDIPEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSANLQSNRGHLDESSHYRVWQDAPILVIVHMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMGETFSILIHRSDLNLDCLYYITHNSYNSFKLFSVRRNQVWIYGTSKSQQKLNQN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi532g00006 446 PANTHER OS02G0165000 PROTEIN 28 393 - -
Vivi532g00006 446 MobiDBLite consensus disorder prediction 157 179 - -
Vivi532g00006 446 MobiDBLite consensus disorder prediction 82 105 - -
Vivi532g00006 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 313 IPR013083 -
Vivi532g00006 446 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Vivi532g00006 446 CDD RING_CH-C4HC3_MARCH 258 306 - -
Vivi532g00006 446 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Vivi532g00006 446 SUPERFAMILY RING/U-box 254 309 - -
Vivi532g00006 446 SMART ringv_2 257 306 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi532g00006 252 312 C3H Transcription Factor Family AT2G37950 43.750 5.19e-11 60.5